Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0336 ATGGACACATCTTGCACACGAATTGCTTTAGGAAccatcctcctcctcctcctgtTGTTGTGCCTCCCTTTCCCTTCCATAGCAGAGGTTATTTATCGTCCCGTTGAGCTCTTCAGCATCAACTGTGGCTCCTCCGGCAACTTGTCCACTATCGATAGTCGGAATTGGATTGGAGACATAAAATTTCTCTCAGAAAGCCACGACTCAGTTGCTGCTCCTGCACTCACACCATCTACCAAACAGGGTCCCTTCTCCTCAGCTCGTCTCTCTCGCTCCCAATTCACTTACTCATTCCCTGTCACCGCGGGCCCAAAGTTCCTTCGCCTCTTCTTCTACTCAGCTTCATACCAAAACTTTGATCGCCCCAAAGCCTATTTCTCAGTCAAAGCAGGCTCATACACCCTCCTTAAAGATTTCAATGCTTCCCTCAATGCTGATGCTGATGACGACCCTGGCCACTCTGACATCTTGTTCAGAGAGTATTGCATCAATCTCGAAGATGGTCAGAAGCTCAACATAACCTTCATTCCAAACACCACAGATTTGTACGCTTTCATCAATGGAATCGAGATTGTTTCCATGCCCCCTTTTCTCTACTACACCAATTCAAACGTCGACAACACTGAATTGCCGCAACTTGTTGAAGAAGCTGGAGCAACATATCTTATTAAAAACGGGTATGCTCTGGAGACAAAGTACCGGTTAAGAGTTGGAGGAGCAGATATCCCCTCCTCAGGGGACACGGGTATGCTCAGGACCTGGGATGCCGATGACAAATATGTAGCCAGTCAAAGTGTACCATCTGTTGATTATGAGAATAGAACTAAGCTGAACTTCACAAAGACTCCAAACTACACGGCACCAGACGAAGTGTACCGAACCTTAAGGAATATGGGACGGGATGGCTCTATGAACATGAGGTTCAACCTCACATGGCAGCTTCCCGTTGATTCTGGCTTCACCTACATGGTAAGGTTACACTTTTGCCAGCTTAAATCGGATGTTAACCGGGCTGGTGCCCAGATATTCTACATCTTCATTCAGGATCTGTTGGTTGAAGACTCGGCAGACGTTTTCTCTTGGGGCGATAAACAGAAGGGTTTCGGCAACGTGTACAAAGGCTACATCGATGACGGTTCAACTCCTGTCGCAGTCAAAAGGCTCAAACCGGGTTCTCGGCAAGGAGTGCAGGAGTTCATGAATGAGATTGAAATGCTGTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATGGGTTACTGTTACGAGAGCAACGAGATGATACTCGTTTACGATTTCATGGATCGCGGAACCCTCCGTGACCATCTCTACGACACTGATAACCCATCTCTGTCGTGGAGCCAAAGGCTCCAGATCTGCATAGGTGCTGCACGAGGACTGCATTATCTGCATACAGGTGCGAAGCACATTATCATTCACCGTGATGTGAAGAGCACCAATATCTTGTTGGATGAAAAATGGGTGGCCAAGGTTTCAGACTTTGGGTTATCCCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAAGGCAGCGTTGGATATTTAGATCCGGAGTATTACAAACGACAGCGTTTGACCGAGAAGTCTGACGTGTACTCGTTTGGGGTGGTGCTCTTGGAGGTATTGTCTGGGAGACAGCCTTTGCTCCGCATGGTGGAGAAGCAACAGATGTCACTGGTTCATTGGGCAAAGCATCTCTATCACAAGGGCTCTCTGGGTGAGATTGTGGATCCAGCACTGAAGGGCCAGATAGCACCCGAGTGTTTGCGCAAGTTTGGAGAGGTTGCCCTGAGTTGTTTGCTTGAGGATGGGACTCAGCGACCTTCCATGAACGACGTCGTTGGGATGCTGGAGTTTGTTCTGCAACTTCAGGATAGTGCTGTTAATGGAGTGATGGAGAGTGGTGGGGATTATGAAGATAGTGAGGACATGTTTAGCAGTAGCCATGGTAGTGTACATGTTTCGGATTATAGTAATAGCACTGGATTGAACACTACAAGCAATGGTAGCTATGGGAGTAAGGGATCTGACAGGTTGATCCCGGAGCATGTTTTCTCTGAGATTAAGGATCCAAAGGGACGATAA 2121 0.4724 MDTSCTRIALGTILLLLLLLCLPFPSIAEVIYRPVELFSINCGSSGNLSTIDSRNWIGDIKFLSESHDSVAAPALTPSTKQGPFSSARLSRSQFTYSFPVTAGPKFLRLFFYSASYQNFDRPKAYFSVKAGSYTLLKDFNASLNADADDDPGHSDILFREYCINLEDGQKLNITFIPNTTDLYAFINGIEIVSMPPFLYYTNSNVDNTELPQLVEEAGATYLIKNGYALETKYRLRVGGADIPSSGDTGMLRTWDADDKYVASQSVPSVDYENRTKLNFTKTPNYTAPDEVYRTLRNMGRDGSMNMRFNLTWQLPVDSGFTYMVRLHFCQLKSDVNRAGAQIFYIFIQDLLVEDSADVFSWGDKQKGFGNVYKGYIDDGSTPVAVKRLKPGSRQGVQEFMNEIEMLSQLRHLHLVSLMGYCYESNEMILVYDFMDRGTLRDHLYDTDNPSLSWSQRLQICIGAARGLHYLHTGAKHIIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLSGRQPLLRMVEKQQMSLVHWAKHLYHKGSLGEIVDPALKGQIAPECLRKFGEVALSCLLEDGTQRPSMNDVVGMLEFVLQLQDSAVNGVMESGGDYEDSEDMFSSSHGSVHVSDYSNSTGLNTTSNGSYGSKGSDRLIPEHVFSEIKDPKGR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0336 706 MobiDBLite consensus disorder prediction 692 706 - -
Ssu3g0336 706 MobiDBLite consensus disorder prediction 657 686 - -
Ssu3g0336 706 MobiDBLite consensus disorder prediction 644 706 - -
Ssu3g0336 706 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 30 363 - -
Ssu3g0336 706 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 367 676 - -
Ssu3g0336 706 SMART serkin_6 361 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0336 706 SUPERFAMILY Protein kinase-like (PK-like) 367 632 IPR011009 -
Ssu3g0336 706 ProSiteProfiles Protein kinase domain profile. 357 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0336 706 PANTHER OS07G0166700 PROTEIN 30 363 IPR045272 GO:0004714|GO:0006468
Ssu3g0336 706 PANTHER OS07G0166700 PROTEIN 367 676 IPR045272 GO:0004714|GO:0006468
Ssu3g0336 706 Pfam Protein tyrosine and serine/threonine kinase 368 627 IPR001245 GO:0004672|GO:0006468
Ssu3g0336 706 Gene3D Transferase(Phosphotransferase) domain 1 435 647 - -
Ssu3g0336 706 Gene3D Phosphorylase Kinase; domain 1 365 434 - -
Ssu3g0336 706 CDD STKc_IRAK 367 630 - -
Ssu3g0336 706 Pfam Malectin-like domain 40 373 IPR024788 -
Ssu3g0336 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Ssu3g0336 706 Gene3D - 36 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0336 Ssu-Chr3 6423477 6426080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0336 367 706 Receptor kinase-like Gene Family AT3G51550 60.511 7.47e-134 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0336 Malectin_like 1.2e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0336 - - gmx:100305394 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0336 3 6423477 6426080 Ssu3g0336 3 6423477 6426080 ECH