Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0334 ATGGCCCAGTCCTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAAGTTCTATGTCGTGGGAGCGGGACTCTTTACAGGTGTTACGGTGGCACTTTACCCCGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAGAATGCTGTAGAGAGAAATGTGTTTTCTGTTGCAAAAGGACTACTTAAAACAGATGGCATCCCTGGTTTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCTCCACTCTAGAGACCACAAAGGTGGCTACCTTCAGAATGCTTGAACCGTTTAGACTATCTGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGCTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATATTCAGGTCATGCCCAATATAGTGGGGGTCTGGATGTTGCACGCAAGGTTTTAAGGACTGATGGCATCCGGGGATTGTATCGAGGGTTTGGTCTGTCTGTTCTTACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCCTGGACCATGGTGCCAAATATGATGAAGGCGCTCCTAGTGTGCAGAAAATTATGTTAGTACAGGCTACTGGAGGGATTATTGCTGGTGCAACTTCGTCCTGCATTACAACCCCATTTGATACTATCAAGACACGATTACAGGTAATGGGACATGAAAATAGAAGCTCTATAAAACAAGTTGTTAAAGATTTAATCAATGAAGATGGTTGGAAAGGCTTTTATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCAGCATGGGGCACTTCAATGATATTGACTTATGAGTATCTGAGTAAGAACTCTTCCTCTCTGATTACATTTTCTTTATGTGTATGTGCAGTTGTGCActtgtttttatgtttgttatcTGTTTGTGTTTTGTGGTTTTGTGCAAGCAAACATTGGAATAAATGTTCAACTAAAACTTag 1056 0.4148 MAQSFGQTEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVATKNAVERNVFSVAKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSTLETTKVATFRMLEPFRLSETTQAAIANGVAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRTDGIRGLYRGFGLSVLTYSPSSAVWWASYGSSQRFIWRFLDHGAKYDEGAPSVQKIMLVQATGGIIAGATSSCITTPFDTIKTRLQVMGHENRSSIKQVVKDLINEDGWKGFYRGFGPRFFSMSAWGTSMILTYEYLSKNSSSLITFSLCVCAVVHLFLCLLSVCVLWFCASKHWNKCSTKT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0334 351 Pfam Mitochondrial carrier protein 228 308 IPR018108 -
Ssu3g0334 351 Pfam Mitochondrial carrier protein 25 100 IPR018108 -
Ssu3g0334 351 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Ssu3g0334 351 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 308 - -
Ssu3g0334 351 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Ssu3g0334 351 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Ssu3g0334 351 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Ssu3g0334 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Ssu3g0334 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Ssu3g0334 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 308 - -
Ssu3g0334 351 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Ssu3g0334 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Ssu3g0334 351 Gene3D Mitochondrial carrier domain 19 313 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0334 Ssu-Chr3 6321915 6325585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0334 10 308 Chloroplast and Mitochondria Gene Families AT5G15640 76.080 3.29e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0334 K15121 - gmx:100781796 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0334 3 6321915 6325585 Ssu3g0334 3 6321915 6325585 ECH
Ssu8g2193 8 57773958 57780896 Ssu3g0334 3 6321915 6325585 PCT