Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0333 ATGGGCTTCTCTACCTTCTTCTCTATGTTACCAAAAGCAACTCCTTGCAATTTGTTCTTGGTTCTGCTGTTTTGTACTTGCTTCACTTCAACAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATGTTCTAGCCTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAACTTCCAACGATATCGTCATATCACTTATCCTGGCTGGTCACTAGGATGGACATGGACAAAAAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATTTAAGGGAAATGTTCCACATTCCTGTAAGAAAGATCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGGAAAGGTGGGGTGCTCAGTTCATGGTTGCAGGATCCAACCAATGCAGTTGCATCATTTCAAGTCAGTGTTGGTAATGCTGGAACCAACAACAGAACTGTCAATGTCCCAAAAAACTTCACCTTGAACGCCCCAGGACCAGGTTATACTTGTGGGCCAGCTAAGATTGTTAGACCCACTAAATTCATTAGCCCAAACAAAAGGAGAGTGACCCAAGCCCTGATGACATGGAGTGTGACATGCACATACTCACAATTTCTAGCTCAAAAAGCTCCCACTTGCTGCGTCTCACTTTCATCTTtctataatgataatattgtGCACTGCCCAACATGTTCATGTGGCTGCCGAAGTAACTCATCTAAATCAAGGAGCTGTGTAGATCTAGATACGCCACTTTTGGCAACAGTTGTTTCTGGCTCTGGGAAGAATAAATTTTCACCTTCGGTTCAATGTACTAGCCATATGTGCCCAATCCAAGTCCACTGGCATGTTAAGCTTAACTACAAAGAGTATTGGCGTGTGAAGGTTactattactaattttaattacaggATGAACTATTCTGACTGGAACTTGGTTGTTCAACACCCAAACTTCGATAATCTGACTCAATTGTTCGGCTTCAACTACAAGTTATTGACTCCTTATGCTTCAATAAATGATACAGCAATGTTATGGGGAATTAAGTCCCATAATGATTTTCTCAACCAAGCTGGCCCTAAGGGCAATGTTCAAGCGGAGCTACTCTTCCGAAAGGATAAAGCaacttttacttttgttaaGGGTTGGGCTTTTCCTCGAAGGATCTACTTCAATGGTGACAACTGTGTGATGCCACCACCTAGTGCTTATCCATTTTAG 1272 0.4104 MGFSTFFSMLPKATPCNLFLVLLFCTCFTSTDAYDPLDPNGNITIKWDVLAWTPDGYVAVVTMNNFQRYRHITYPGWSLGWTWTKKEVIWSMMGGQTTEQGDCSKFKGNVPHSCKKDPTVVDLLPGTPYNQQIANCWKGGVLSSWLQDPTNAVASFQVSVGNAGTNNRTVNVPKNFTLNAPGPGYTCGPAKIVRPTKFISPNKRRVTQALMTWSVTCTYSQFLAQKAPTCCVSLSSFYNDNIVHCPTCSCGCRSNSSKSRSCVDLDTPLLATVVSGSGKNKFSPSVQCTSHMCPIQVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFDNLTQLFGFNYKLLTPYASINDTAMLWGIKSHNDFLNQAGPKGNVQAELLFRKDKATFTFVKGWAFPRRIYFNGDNCVMPPPSAYPF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0333 423 PANTHER COBRA-LIKE PROTEIN 11 423 - -
Ssu3g0333 423 PANTHER PROTEIN COBRA 11 423 IPR006918 GO:0010215|GO:0031225
Ssu3g0333 423 Pfam COBRA-like protein 57 220 IPR006918 GO:0010215|GO:0031225
Ssu3g0333 423 PIRSF COBRA 6 423 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0333 Ssu-Chr3 6316725 6320302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0333 19 423 COBRA Gene Family AT3G02210 72.660 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0333 - - gmx:100783820 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0333 3 6316725 6320302 Ssu3g0333 3 6316725 6320302 ECH
Ssu3g0333 3 6316725 6320302 Ssu8g2191 8 57746879 57751333 ECH
Ssu8g2191 8 57746879 57751333 Ssu3g0333 3 6316725 6320302 PCT