Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0332 ATGGCCTTCTCTCTGTTACCAAAAGCAACCCCTTGCATTTTGTTCTTGGCTCTGCTGTCTTGTACTTGTTTCACTTCAACAGATGCTTATGACCCTCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATCAGCTGGACCCCTGATGGATATGTGGCTGTTGTTACAATGAACAACTTCCAACAATATCGTCATATCCCTTTACCTGGCTGGTCAATGGGATGGACATGGGCAAAAAAAGAGGTAATATGGAGCATGATGGGAGGGCAGACTACTGACCAAGGGGATTGTTCGAAATTTAAGGGAAATGTTCCACATTGCTGTAGGAAAGATCCGACTGTTGTAGATTTACTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTGCTCAGTTCATGGGCGCAGGATCCAACCAATGCAGTTGCGTCATTCCAAGTCAGTGTTGGTAGAGCTGGAACCACCAACAGAACTGTCAAACTCCCAAAAAACTTCACCTTGAAAGCACCAGGACCAGGTTATACTTGTGGGCCAGCTAAGATTGTGAGACCCACTCAATATATTAGCCCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGAATGTGACTTGCACATACTCACAATTTCTAGCTCAGAAAACTCCCACTTGCTGCGTCTCACTTTCGTCTTTCTATAATGATACTATTGTGCCCTGCCCAACATGTGCATGTGGTTGCCAAACTAACTCATCTCAGTCAGGGAGCTGTGTAGATCCGGATACGCCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAATTTTTCACCTTTGGTTCAATGTACTAGTCATATGTGCCCAATCCGAATCCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTTactattactaattttaattacaggATGAATTATTCtgagtggaacttggttgttcaACACCCAAACTTTGACAATCTGACTCAACTGTTCAGTTTCAACTATAAGTCATTGACTCCTTATGGTTCAATAAATGATACAGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACCAAGCTGGCCCTAATGGCAATGTTCAATCAGAGCTACTCTTCCGAAAGGATAAAGCAACTTTTACTTTTGATAAGGGTTGGGCTTTTCCTCGAAGGATCTACTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCCGGTTCTCGGCAAGAGGTTTCCTTATTTGCTTTAGTGATAGCTTCTTTGGTAGCCTTGGTATTTTATGCACATGCATAA 1347 0.4172 MAFSLLPKATPCILFLALLSCTCFTSTDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIPLPGWSMGWTWAKKEVIWSMMGGQTTDQGDCSKFKGNVPHCCRKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKLPKNFTLKAPGPGYTCGPAKIVRPTQYISPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQTNSSQSGSCVDPDTPHLASVVAGSGKNNFSPLVQCTSHMCPIRIHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGSINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDKATFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSRQEVSLFALVIASLVALVFYAHA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0332 448 PIRSF COBRA 2 448 IPR006918 GO:0010215|GO:0031225
Ssu3g0332 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
Ssu3g0332 448 PANTHER COBRA-LIKE PROTEIN 7 447 - -
Ssu3g0332 448 PANTHER PROTEIN COBRA 7 447 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0332 Ssu-Chr3 6303767 6307063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0332 13 443 COBRA Gene Family AT3G02210 75.058 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0332 - - gmx:100783820 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0332 3 6303767 6307063 Ssu3g0332 3 6303767 6307063 ECH
Ssu3g0332 3 6303767 6307063 Ssu8g2190 8 57743206 57745901 ECH
Ssu8g2190 8 57743206 57745901 Ssu3g0332 3 6303767 6307063 PCT
Ssu3g0332 3 6303767 6307063 Ssu8g2191 8 57746879 57751333 PCT