Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0328 ATGGCTTTGCTCATGGCAGTTCTTGGGGGTGTTGTGTTGGTGCTCTGTTTTTGCTCTGCTCTCTTGAAGTGGAATGAAATAAGGTACAGGAGAAAAGGTTTGCCTCCTGGCACAATGGGGTGGCCTGTTTTTGGAGAGACAACTGAGTTTCTCAAGCAAGGTCCTAACTTCATGAAGAACAAGAGGGCAAGGTATGGCAGTTTTTTCAAATCCCACATCCTGGGGTGTCCTACCATTGTATCCATGGATCCGGAGCTTAATAGATACATACTCATGAATGAAGCAAAAGGGCTTGTTCCCGGGTACCCACAATCCATGTTAGATATCTTAGGCAAAAGCAATATTGCAGCTGTTCATGGCTCCACACACAAGTACATGAGAGGGGCACTGCTTTCCATCATTAGCCCCACCTTGATCAGAGATCAGCTTTTGCCAAAAATTGATGAGTTCATGAGAACCCACTTGAGTGATTGGGATAACAAGGTCATAAACATCCAAGAGAAAACTAAAGAGATGGCATTTCTCTCTTCCCTGAAGCAGATTGCTGGTATGGAATCCAGCTCAATTTCTCAACCCTTCATGAGAGAGTTCTTTAAACTAGTTTTAGGAACTCTATCTTTGCCTATTGACCTTCCTGGCACAAATTATCGCCGTGGATTGCAGGCAAGGAAGAGTATTATCCGCATTCTGAGTCAGTTGCTAGAGGAAAGGAAAGCATCACAAAATGCCCACGTGGACATGCTTGGTTGCTTGATGAATAGAGATGAAAATCGATACAAGCTAACTGATGAGGAAATTATTGAtctaattattacaattatgtATTCCGGTTATGAAACTGTTTCAACTACATCAATGATGGCCGTGAAGTACCTCCACGACCATCCCAAAGTTCTTGAAGAAATCAGAAAAGAGCATTTTGCCataagagaaaggaaaaagccAGAGGATCCAATTGACTGCAATGATCTCAAGTCAATGAGGTTTACTCGTGCGGTGATTTTTGAGACCTCGAGATTAGCTACAATAGTTAATGGGGTTCTGAGAAAAACAACTCACGACATGGAACTAAACGGCTATTTGATTCCTAAAGGGTGGaggatatatgtatatacaagagaaataaattatgatccATTTCTATATCATGATCCACTAACATTCAACCCATGGAGATGGCTGGGTAACAGTCTAGATTCACAGGGCCACTTCTTGATATTTGGAGGAGGCACCAGACAATGTCCTGGGAAGGAATTGGGGATGGCAGAAATTTCCACTTTCTTGCACTACTTCGTAACTACATACAGGTGGGAAGAAGTAGGAGGagataaactaatgaaatttcCTAGAGTTGTGGCACCAAATGGACTGCACATAAGGGTCTCATCTTATACTAACTAG 1401 0.4033 MALLMAVLGGVVLVLCFCSALLKWNEIRYRRKGLPPGTMGWPVFGETTEFLKQGPNFMKNKRARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVPGYPQSMLDILGKSNIAAVHGSTHKYMRGALLSIISPTLIRDQLLPKIDEFMRTHLSDWDNKVINIQEKTKEMAFLSSLKQIAGMESSSISQPFMREFFKLVLGTLSLPIDLPGTNYRRGLQARKSIIRILSQLLEERKASQNAHVDMLGCLMNRDENRYKLTDEEIIDLIITIMYSGYETVSTTSMMAVKYLHDHPKVLEEIRKEHFAIRERKKPEDPIDCNDLKSMRFTRAVIFETSRLATIVNGVLRKTTHDMELNGYLIPKGWRIYVYTREINYDPFLYHDPLTFNPWRWLGNSLDSQGHFLIFGGGTRQCPGKELGMAEISTFLHYFVTTYRWEEVGGDKLMKFPRVVAPNGLHIRVSSYTN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0328 466 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 407 416 IPR017972 GO:0005506|GO:0016705
Ssu3g0328 466 SUPERFAMILY Cytochrome P450 28 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS P450 superfamily signature 414 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS P450 superfamily signature 405 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS P450 superfamily signature 276 293 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS P450 superfamily signature 332 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PANTHER CYTOCHROME P450 FAMILY PROTEIN 8 462 - -
Ssu3g0328 466 Pfam Cytochrome P450 35 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PANTHER CYTOCHROME P450 26 8 462 - -
Ssu3g0328 466 Gene3D Cytochrome P450 25 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 371 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 265 282 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 331 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 285 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 414 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g0328 466 PRINTS E-class P450 group I signature 404 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0328 Ssu-Chr3 6249649 6253280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0328 82 464 Cytochrome P450 AT5G38970 68.490 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0328 K09590 - gmx:100785414 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0328 3 6249649 6253280 Ssu3g0328 3 6249649 6253280 ECH
Ssu8g2187 8 57675682 57678846 Ssu3g0328 3 6249649 6253280 PCT