Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0323 ATGGTAGCTGTGATGGGTTCCCTAGCAACAGAGAAAGGGTGGAGGAAGGGCCCTTGGACTGGTGAAGAGGACAAGTTGCTAAGTGCATATGTTAGCTCGCATGGGGAGGGTAGTTGGAGTTCGGTGGCGAATTGTACAGGATTAAATAGGAACGGCAAAAGTTGTAGGTTAAGATGGGTAAATTATTTGAGGCCGGGCCTCAAGAAAGGTCAATTAACACCTCTGGAAGCCGGAATCGTTATTGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTACCGGGTAGAACTGATAACGTGATTAAGAACTATTGGAGAACCCACTTCGGGAAGAGTGAGAAATCCAAACACAAGGAGCTAGAAATGCATACAGAAAAGGTGCTAAAACAGTTGAAACGAAAGCGACAACAGGAACAACAATCTCAAGAGTACTATGATATCAAAATCATGTCTCATGAAGAGACCAAAAACGAAACAAAATCCTTTGAGACGCAAAATAATGAGCAACAAGAAATGGGTTTTGTGTACCCAACAATAGAGCACCAATATACCGTTCCTTCAATGCACGAGGGATTCTCATCCACGTGGTCCAACACTCTAGCAGATGATGACTCATGGTTTAGTTCATGGGGCTTCGATGAGCCACAAAGTTTTGCAGATTATGTTTAG 684 0.4284 MVAVMGSLATEKGWRKGPWTGEEDKLLSAYVSSHGEGSWSSVANCTGLNRNGKSCRLRWVNYLRPGLKKGQLTPLEAGIVIELHAILGNKWSTIAKYLPGRTDNVIKNYWRTHFGKSEKSKHKELEMHTEKVLKQLKRKRQQEQQSQEYYDIKIMSHEETKNETKSFETQNNEQQEMGFVYPTIEHQYTVPSMHEGFSSTWSNTLADDDSWFSSWGFDEPQSFADYV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0323 227 Gene3D - 72 177 - -
Ssu3g0323 227 Gene3D - 16 68 - -
Ssu3g0323 227 CDD SANT 73 114 IPR001005 -
Ssu3g0323 227 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Ssu3g0323 227 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Ssu3g0323 227 PANTHER MYB TRANSCRIPTION FACTOR 8 219 - -
Ssu3g0323 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Ssu3g0323 227 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Ssu3g0323 227 CDD SANT 18 63 IPR001005 -
Ssu3g0323 227 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Ssu3g0323 227 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Ssu3g0323 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Ssu3g0323 227 SMART sant 15 65 IPR001005 -
Ssu3g0323 227 SMART sant 68 116 IPR001005 -
Ssu3g0323 227 Coils Coil 157 177 - -
Ssu3g0323 227 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 219 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0323 Ssu-Chr3 5946301 5948564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0323 13 224 MYB Transcription Factor Family AT3G30210 50.000 2.06e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g0323 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0323 K09422 - gmx:100785540 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0323 3 5946301 5948564 Ssu3g0323 3 5946301 5948564 ECH