Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0322 ATGGCAGATAGAACCATAAGTAATCATATCGAAGAAGTTAAAGTGAAAATCATGGTAGCTGTGATGGGTTCCCTAGCATCAGAGAAAGGGTGGAGGAAAGGGCCTTGGACTGGTGAAGAGGACAAGTTGTTAAGTGAATATGTTAGCTTGCAAGGGGAGGGTAGGTGGACCTCGGTGGCGAAGTGTACAGGATTAAATAGGAGCGGCAAGAGCTGCAGGTTCAGATGGGTAAATTATTTGAGGCCCGGCCTCAAGAAAGGTCAATTAACACCTCTGGAAGCCGAAATGATTATTGAACTACATGCAATTTTGGGCAACAAGTGGTCTACAATAGCAAAGCACTTGCCAGGTAGAACTGATAACGAGATTAAGAACTACTGGAGAACCCACTTTGGGAAGAGTGAGAAATCCAAACACAAGAAGTTGGAAATGCAAAAAGCAAAGGTGCTAAAACAGTCGAAACAAAAGCAACAACAGGAACAACAACCTCACGAGTACGATATCAAAACCACCACGTCTCATGAAGAGACCAAAAACGAAACAAAATCCTTTGAGACACAAAACAATAAGCAACAAGAAGTGGGCTTCATTTACCCAACAATAATAGAGCACCAATATACGGTTCCTTCAATGCATGAAGGATTCTCATCCACGTGGCCAGACACTCTAGCGGATGATGGCTCGTGGTTTAGTGTATGGGGCTTTGATGAACCACAACCACAAAGTATTGCAAATTATGTTAACCAGTTTAGCAAATGTGCCATGCCAAACCAAGCTACCTTTGGGGTTGGGGGGGTTTCCATGCAAAATCATGATAcaactttttgttttgatgaTGCATTCGATAACCTCTTCTACGGAAAAGACATGTTTAGATGA 879 0.4198 MADRTISNHIEEVKVKIMVAVMGSLASEKGWRKGPWTGEEDKLLSEYVSLQGEGRWTSVAKCTGLNRSGKSCRFRWVNYLRPGLKKGQLTPLEAEMIIELHAILGNKWSTIAKHLPGRTDNEIKNYWRTHFGKSEKSKHKKLEMQKAKVLKQSKQKQQQEQQPHEYDIKTTTSHEETKNETKSFETQNNKQQEVGFIYPTIIEHQYTVPSMHEGFSSTWPDTLADDGSWFSVWGFDEPQPQSIANYVNQFSKCAMPNQATFGVGGVSMQNHDTTFCFDDAFDNLFYGKDMFR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0322 292 MobiDBLite consensus disorder prediction 134 188 - -
Ssu3g0322 292 PANTHER MYB TRANSCRIPTION FACTOR 24 249 - -
Ssu3g0322 292 SMART sant 85 133 IPR001005 -
Ssu3g0322 292 SMART sant 32 82 IPR001005 -
Ssu3g0322 292 Coils Coil 139 162 - -
Ssu3g0322 292 Gene3D - 89 131 - -
Ssu3g0322 292 Gene3D - 33 85 - -
Ssu3g0322 292 MobiDBLite consensus disorder prediction 158 183 - -
Ssu3g0322 292 SUPERFAMILY Homeodomain-like 30 127 IPR009057 -
Ssu3g0322 292 CDD SANT 35 80 IPR001005 -
Ssu3g0322 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Ssu3g0322 292 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Ssu3g0322 292 MobiDBLite consensus disorder prediction 134 150 - -
Ssu3g0322 292 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 249 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu3g0322 292 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Ssu3g0322 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Ssu3g0322 292 CDD SANT 90 131 IPR001005 -
Ssu3g0322 292 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Ssu3g0322 292 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0322 Ssu-Chr3 5928381 5931191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0322 30 244 MYB Transcription Factor Family AT3G30210 48.165 3.39e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g0322 Myb_DNA-binding 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0322 K09422 - gmx:100816944 422.55