Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0321 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACGTTTGCAAAGAGAAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTAtctgttctctgtgatgctgagGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTTTGTAGCAGCTCTAGCATGCCCAAAACACTTGAAAGATACCAGAAATGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAGCTCGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTCTAGGGGAAGACCTGGGCCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAgACACAATTCATGCTGGATCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTATAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTCCACAGAATTCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAATCCCACATTGCAGATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGCCACAACTCAAGCTCAACAAGTGAATGGCTTTATTCCAGGGTGGATGCTTTGA 747 0.4324 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMPKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMPYGGPQNSHSQGFFQPLECNPTLQIGPDYRYNAVASDQITATTQAQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0321 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 233 - -
Ssu3g0321 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0321 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ssu3g0321 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu3g0321 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu3g0321 248 PANTHER MADS BOX PROTEIN 1 233 - -
Ssu3g0321 248 MobiDBLite consensus disorder prediction 192 206 - -
Ssu3g0321 248 Coils Coil 124 144 - -
Ssu3g0321 248 MobiDBLite consensus disorder prediction 186 206 - -
Ssu3g0321 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ssu3g0321 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0321 Ssu-Chr3 5907535 5914151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0321 1 248 MADS-box Gene Family AT5G15800 74.525 4.89e-124 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu3g0321 K-box 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0321 K09264 - gmx:100788427 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0321 3 5907535 5914151 Ssu1g2008 1 56837780 56847445 ECH
Ssu3g0321 3 5907535 5914151 Ssu6g1172 6 19109122 19117286 ECH
Ssu3g0321 3 5907535 5914151 Ssu3g0321 3 5907535 5914151 ECH
Ssu3g0321 3 5907535 5914151 Ssu8g2183 8 57567296 57572641 ECH
Ssu2g1444 2 59890285 59900389 Ssu3g0321 3 5907535 5914151 ECH
Ssu8g2183 8 57567296 57572641 Ssu3g0321 3 5907535 5914151 PCT