Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0316 ATGGGTTCTGTTTGTTGCTGTTTGAATGTTGATGAGTTTGAAGATTATATGAATCCAAATAATTCTGTATATAGGAACTGTGTTTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGTGCATTCGATTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGATATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGTAGACCCCAGGTTTTTCCATTCACAGCGTGATGGATTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGGGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCAGGTGGTAAATGGAATGATACCAGCGAAGATGGATCAAAGGAATTCCGTTCTAAGTCGTCTATTAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGCTTGTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGGGATGGTATTCGATGAAACGACTGATTGA 684 0.4079 MGSVCCCLNVDEFEDYMNPNNSVYRNCVCLSCFVQNFLTVYASIFRRGEVHSIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDVDPRFFHSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNDTSEDGSKEFRSKSSIRLSSAKLTTGAGLVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKGMVFDETTD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0316 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Ssu3g0316 227 Pfam RING-H2 zinc finger domain 171 216 IPR024766 GO:0008270
Ssu3g0316 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Ssu3g0316 227 SUPERFAMILY RING/U-box 171 222 - -
Ssu3g0316 227 MobiDBLite consensus disorder prediction 101 123 - -
Ssu3g0316 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 225 - -
Ssu3g0316 227 SMART ring_2 176 216 IPR001841 -
Ssu3g0316 227 MobiDBLite consensus disorder prediction 101 150 - -
Ssu3g0316 227 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0316 Ssu-Chr3 5834492 5838896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0316 1 224 C3H Transcription Factor Family AT5G38895 58.407 7.65e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0316 - - gmx:100788192 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0316 3 5834492 5838896 Ssu3g0316 3 5834492 5838896 ECH