Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0315 ATGGACACAACTGGCACACGAATTGCTTTAGGAGCCATCCTCCTCTTGCTTTTGTGCCTCCCTTACCTTTCCATAGCAGATGTTGTTTATCGTCCCCTTGACCTTTACAGCATCAACTGTGGCTCAGCCAACAACTTGATCACGCCCGATCGGAATTGGACTGGAGACACGAAATTCCTCTCAGAAAGAGGGGACTCAGTTCTTGCTTCTGCACTCACGTCATCTACCATACTGGGTCCTTACACCTCAGCTCGCCTCTCTCGCTCCCAATTCACTTACTCATTCCCTGTCACCGCAGGCCCAAAGTTTCTTCGCCTCTTCTTCTACTCAACTTCATACCAAAACTTCGATCGCTCCAAAGCCTATTTCTCAGTCAAAGCAGGCCCATACACCCTCCTTCAAGATTTCAATGCTTCCCTCAATGCTGATGCTGATGATGACCCTGGCCACCCCGACATCTTGTTCAGAGAGTATTGCGTCAAGCTCGGACATGGTGAGAGCCTCAACATAACCTTCATTCCAAGCACTACAGCCCAGCATCCAGATTCGTACGCTTTCATCAATGGAATCGAGATTGTTTCAATGCCCCCTTATCTCTACTACACCTATCCTGATGCTGACAACACTGGATTGCCGCAAATTGTTGGTGGAGCAACATATCCTATTGAAAACAACTCAACACATCCTATTGACCACAACTCAGCTCTGGAGACAAATTACCGGTTAAGAGTTGGAGGAGCAACAATCCCCCCTCAGGGACACGGACGAAGTGTACCGAATCTTAAGGAATATGGAAGGAATGCCTCTACCAACATGGAGTTCAACCTCACATGGCAGCTTCCTGTTGATTCTGGCTTCACCTATTTGCTAAGGTTACACTTTTGCCAGCTTAACCCGCTGGTTAACCACACTGGTGACCTTAGATTCTGCATCTTCATTGAGGATCAGTTGGTTACCGATTGGGCAGACGTTCTCTCTTGGAGCGATGAACAGAAGGGCGAGGGAGGCTTCGGCAACGTGTACAAAGGCTGCATCGACGACTGTTCAACTACTGTCGCAATCAAAAGGCTGAAACAGGATTCTCGGCAAGGTGTGCGTGAGTTCAAGAACGAGATCGAAATGCTGTCTCAACTTCGTCATCCCAATATTGTTTCCCTCATCGGTTGCTGTTACGAGAGCAACGAGATGATCCTGGTTTACGAATTCATGGATTGCGGAAACCTCCGTGACCATCTGTACGACACTGATAACCCGTCTCTGTCGTGGAAGCATAGGCTCCAGATTTGCATAGGTGTTGCGCGAGGATTGCGTTATCTGCATACAGGTGCGAAGCACGTGATCATTCACCGTGACGTGAAGAGCACCAATATCTTATTGAATGAGAAATGGGCGGCCAAGGTTTCAGATTTCGGGTTATCCCGAACTGGGTCCACGGATATTTCAATGACCTCCGTGAACACACAGGTGAAAGGTAGTATTGGATATTTAGACCCTGAGTATTACAAGCGACATCTTTTGACGGAGAAGTCTGACGTGTACTCGTTTGGGGTGGTGCTCTTGGAGGTATTATCTGGGAGGCAGCCTTTGCTCCGTTGGGAGGAGAAGCAACGGATGTCACTTGTTAATTGGGCGAAGCATTGCTATGAGAAGGGAACTCTGAGTGAGATTGTTGATGTAGAACTGAAGGGGCAGATAGCACCTGATTGTTTGCGCAAATTTGGTGAGGTTGCCCTGAGCAGTTTGCTTGAGGATGGGACTCAGCGGCCTTCCATGAACGACGTCGTTGGAATGTTGGAGTTCGTTCTGCAGCTTCAGGATGGTGCTGTTAATGGAGTGGTGGACAGTGGTGGGGATTATGAAGATAGACACGTTTCGGATTATATTAAGAGCACTGAATTGAGCATCACAAGCGATGGAGATGGTAGCCATGGGAGTAAGAAATCTGACAGGATGGTCCTAGAGCATGTTTTCTCTGAGATTAAGGATCCAAAGGGTCGATGA 2001 0.4808 MDTTGTRIALGAILLLLLCLPYLSIADVVYRPLDLYSINCGSANNLITPDRNWTGDTKFLSERGDSVLASALTSSTILGPYTSARLSRSQFTYSFPVTAGPKFLRLFFYSTSYQNFDRSKAYFSVKAGPYTLLQDFNASLNADADDDPGHPDILFREYCVKLGHGESLNITFIPSTTAQHPDSYAFINGIEIVSMPPYLYYTYPDADNTGLPQIVGGATYPIENNSTHPIDHNSALETNYRLRVGGATIPPQGHGRSVPNLKEYGRNASTNMEFNLTWQLPVDSGFTYLLRLHFCQLNPLVNHTGDLRFCIFIEDQLVTDWADVLSWSDEQKGEGGFGNVYKGCIDDCSTTVAIKRLKQDSRQGVREFKNEIEMLSQLRHPNIVSLIGCCYESNEMILVYEFMDCGNLRDHLYDTDNPSLSWKHRLQICIGVARGLRYLHTGAKHVIIHRDVKSTNILLNEKWAAKVSDFGLSRTGSTDISMTSVNTQVKGSIGYLDPEYYKRHLLTEKSDVYSFGVVLLEVLSGRQPLLRWEEKQRMSLVNWAKHCYEKGTLSEIVDVELKGQIAPDCLRKFGEVALSSLLEDGTQRPSMNDVVGMLEFVLQLQDGAVNGVVDSGGDYEDRHVSDYIKSTELSITSDGDGSHGSKKSDRMVLEHVFSEIKDPKGR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0315 666 CDD STKc_IRAK 333 599 - -
Ssu3g0315 666 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0315 666 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 28 330 - -
Ssu3g0315 666 Gene3D Transferase(Phosphotransferase) domain 1 404 613 - -
Ssu3g0315 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Ssu3g0315 666 PANTHER OS07G0166700 PROTEIN 28 330 IPR045272 GO:0004714|GO:0006468
Ssu3g0315 666 SMART serkin_6 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0315 666 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 333 634 - -
Ssu3g0315 666 Gene3D - 34 195 - -
Ssu3g0315 666 Gene3D Phosphorylase Kinase; domain 1 333 403 - -
Ssu3g0315 666 PANTHER OS07G0166700 PROTEIN 333 634 IPR045272 GO:0004714|GO:0006468
Ssu3g0315 666 Pfam Protein tyrosine and serine/threonine kinase 332 595 IPR001245 GO:0004672|GO:0006468
Ssu3g0315 666 SUPERFAMILY Protein kinase-like (PK-like) 331 601 IPR011009 -
Ssu3g0315 666 Pfam Malectin-like domain 38 247 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0315 Ssu-Chr3 5815566 5818161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0315 329 666 Receptor kinase-like Gene Family AT3G51550 54.545 8.57e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g0315 PK_Tyr_Ser-Thr 1.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0315 - - gmx:100807847 514.612