Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0303 atggctAGGTCTGCGAAAGGGCATCAAGATGAATTCGAGGACGACGACGACGAAGAGGAACTCTTAACTGCAaacacctcttcctctctcaacaAAGTGAAGGTTGATGAACCCAGCAGGGGGAAGAGGGTGAACCCGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCtcaaaatgatcaaaaaagagataaggcatccTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAGGAAAAGTTACAAATTTATGAACAGTCTTATGAAGGATGGAATCAGGAGCCGACAAAATTAATTCCATGGAGAAATCATCACGGGCCTGCAGAAAATACTACAGATCCTTCTCAAGCTATACAAAATGGGTCTGTTAGTGAGAAAAATAGCAATGTCTCTCCATCATTGCCCAAAAATGTACAGAACCCAATAGAGTCTGACTTCTCAATGACAACTATTCAGAAGGGCCACACCCCCAGTTCAGCTACAGAAGCAGTTCCCCTGACCATGCAAATGCGATTGGACATGTTTGATCAAGTTGTTAGCAGTGGTATGGCAACCCAACATCTGCAGGAACCTGTATCTAATGTTGACATGCCCTCCCATACCCAGCCTCAAGTATGGCTTAATAAACCAAACAAGGGCAACTATGTTCTTCCACATGATAATACAATGAAGGAACAGGAGGAGCTGGTGATTGAGAGTGGATCAGATAGCATCTCAAGTGCCTATTCTCAGGGAATATTAGATACTTTCACACAAGCGCTGCAGTCTTCGGGCATAGATATGTCCCAGACTAGTGTCTCAGTGCAAATTGATGTTGGAAGACGAGCAAATACTGGGTTGATCCCCTCTGCATATAGTTCAAAGGGTCATGAAAACCAATTTGTGAGCAACACAGCAATAGCACATTCCGGAGTTGATTACTGCAATATTGATTCTGAACATAGTCCTAAGAGGCTAAGACAAGACGCAAGCTAG 1032 0.4109 MARSAKGHQDEFEDDDDEEELLTANTSSSLNKVKVDEPSRGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWNQEPTKLIPWRNHHGPAENTTDPSQAIQNGSVSEKNSNVSPSLPKNVQNPIESDFSMTTIQKGHTPSSATEAVPLTMQMRLDMFDQVVSSGMATQHLQEPVSNVDMPSHTQPQVWLNKPNKGNYVLPHDNTMKEQEELVIESGSDSISSAYSQGILDTFTQALQSSGIDMSQTSVSVQIDVGRRANTGLIPSAYSSKGHENQFVSNTAIAHSGVDYCNIDSEHSPKRLRQDAS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0303 343 Coils Coil 93 113 - -
Ssu3g0303 343 MobiDBLite consensus disorder prediction 1 62 - -
Ssu3g0303 343 MobiDBLite consensus disorder prediction 121 160 - -
Ssu3g0303 343 SMART finulus 52 102 IPR011598 GO:0046983
Ssu3g0303 343 MobiDBLite consensus disorder prediction 127 160 - -
Ssu3g0303 343 Gene3D - 45 117 IPR036638 GO:0046983
Ssu3g0303 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Ssu3g0303 343 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Ssu3g0303 343 PANTHER TRANSCRIPTION FACTOR BIM3 1 342 - -
Ssu3g0303 343 CDD bHLH_AtBIM_like 48 121 - -
Ssu3g0303 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 125 IPR036638 GO:0046983
Ssu3g0303 343 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 342 IPR044295 GO:0003700|GO:0006351|GO:0046983
Ssu3g0303 343 MobiDBLite consensus disorder prediction 35 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0303 Ssu-Chr3 5589676 5594138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0303 3 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.777 6.14e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g0303 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0303 - - gmx:100791730 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0303 3 5589676 5594138 Ssu3g0303 3 5589676 5594138 ECH