Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0300 ATGGTTGATCAAGCTGATTTAGTTATCATTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATAGCTTGCCTCATATATTTTAGCACAAGGTGGTACAAGAAGCAAGCTCATCTTAGCCGATCTGCGAATGAACCTAGTTTAACAACACTCCCAATACGAACAAATGGATTAGGAACAAGCACTGACTATAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGAGAAATTCAAAAGGCCACACACAATTTCACAAATACATTGGGACAAGGATCATTTGGCACAGTTTATAAAGCCATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGgagaaagaatttcaaacaGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGCTTATGCTGGTTTATGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTATTGATATTTCACATGGAATAGAATACCTACATGAAGGGGCAGTCCCACCAGTCATACATCGCGATTTGAAATCTGCTAATATATTGCTAGATCAATCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCACAAGCAAGTTCACAATGAAGAGTGACATTTACAGTTttggtataataatttttgagctTATCACTGCCATCCACCCACATCAAAATTTGATGGAATACATCAACCTTGCCGCAATGGATTATGATGGTGTAGATGGGATTCTGGACAAGCAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCGCCTAAGAAACGCCCCTCCATAAGTGAGGTTTCGCAGGGTATATTGAGGATTAAGCAAAGGCGCCTCATGAAAGAAGACACCATGTCATTTGCAAGCAGCAACTTCTCCCGAACTGTGAGTCAAATAGAGGATCAACAGGTTGAATTAAGTAGAATAATCACCATGAACCACAGAGAAATGGGGTGA 1170 0.3983 MVDQADLVIICVSVGVALGVLIACLIYFSTRWYKKQAHLSRSANEPSLTTLPIRTNGLGTSTDYSASLTSSIATSREIQKATHNFTNTLGQGSFGTVYKAMMPTGEVVAVKMLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQLMLVYEFMSNGSLENLLYGEEKELSWDERLQIAIDISHGIEYLHEGAVPPVIHRDLKSANILLDQSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCNLEEVRQLAKIAHKCLHKSPKKRPSISEVSQGILRIKQRRLMKEDTMSFASSNFSRTVSQIEDQQVELSRIITMNHREMG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0300 389 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 76 386 - -
Ssu3g0300 389 Pfam Protein tyrosine and serine/threonine kinase 85 340 IPR001245 GO:0004672|GO:0006468
Ssu3g0300 389 Gene3D Phosphorylase Kinase; domain 1 57 158 - -
Ssu3g0300 389 SMART serkin_6 83 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0300 389 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 75 - -
Ssu3g0300 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Ssu3g0300 389 ProSitePatterns Protein kinases ATP-binding region signature. 89 111 IPR017441 GO:0005524
Ssu3g0300 389 ProSiteProfiles Protein kinase domain profile. 83 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0300 389 Gene3D Transferase(Phosphotransferase) domain 1 159 367 - -
Ssu3g0300 389 SUPERFAMILY Protein kinase-like (PK-like) 61 339 IPR011009 -
Ssu3g0300 389 CDD STKc_IRAK 89 345 - -
Ssu3g0300 389 PANTHER OS01G0750732 PROTEIN 76 386 - -
Ssu3g0300 389 PANTHER OS01G0750732 PROTEIN 9 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0300 Ssu-Chr3 5555538 5562556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0300 78 347 Receptor kinase-like Gene Family AT1G67720 44.211 2.32e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Ssu3g0300 PK_Tyr_Ser-Thr 4.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0300 - - gmx:100794239 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0300 3 5555538 5562556 Ssu3g0300 3 5555538 5562556 ECH
Ssu8g2172 8 57136964 57146342 Ssu3g0300 3 5555538 5562556 PCT