Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0288 ATGAAGGCTATTGGCCAACAACCTCAAAATGGTTTTCCATTTGgcagagaagaagaaatcaaggAAGAACAAGGCGTTGTTGTTAATGAGAATGCACCGTTGTTGCCAAAAAGTCAGGTTCAGGAGAGTGATGCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTCAACTTGTCCACCACAATTATTGGTGCTGGGATCATGGCCTTGCCTGCAACCTTGAAGCAGTTGGGGATGGTGCCTGGTATTGTTGCCATCATCATCATGGCTTTGTTGACAGAGAAGTCAATTGAGCTTTTGATTAGGTTTACCCGGGCCGGGAAGTCTGTTTCTTATGCTGGCCTCATGGGGGATTCCTTTGGGAAATATGGAAAGGCTCTGGTGCAGCTATGTGTTATAATCAATAACATTGGTGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAAGTGTAGATCATCACTATGGTATCCTTGAAGGATGGTTTGGTGTGCACTGGTGGACGGGGAGGACATTTGTTGTCCTTTTTACAACATTTGCCATATTTGCACCCCTTGCAAGCTTTAAGCGAATTGatTCATTGAGATTCACATCCGCCCTTTCAGTTGCACTAGCAGTTGTTTTTCTAGTCATTGCTGTGGGTATCGCTATTATCAAGATTATAAGTGGAGGCATTGGGATGCCCAGACTCTTCCCAGTCACTACTGATGTAGCATCATTCTTTAAACTATTCACTGTAGTTCCTGTGTTTGTGACTGCCTATATCTGCCACTACAATGTTCACAGCATAGACAATGAACTTGAGGACTCCTCACAGATGCGAGGGGTTGTACAAACCGCCCTTGTTCTATGCTCTTCAGTGTATGTAATGATAAGCTTCTTTGGGTTCCTCCTGTTTGGTGAAGGAACTCTTGATGATGTGCTGGCCAATTTCGATACCAATCTTGGAATTCCCTTTGGTTCTGTGCTCAATGATGCTGTTCGTATAAGCTATGCTGCTCACCTCATGCTTGTATTTCCAGTTGTCTTCTATCCATTGCGGCTCAATATAGATGGTCTCCTCTTCCCTTCATCAAGGCCTCTGGTTCTGGATAACTTCAGATTTGCATCAGTCACTATTGCCCTTATCGGTGTTATCTTCCTGGGAGCAAATTTCATACCTAGCATTTGGGATGCTTTCCAGTTTACTGGAGCAACTGCTGCAGTCTGCATAGGATTCATTTTCCCAGCTGCCATCACTCTTAGGGACCGCTACAACATTGCTACTAAATCAGACAAGATTTTGTCTGTCGTTATGATAGTCCTGGCAGTCTTCTCAAACGTTGTGGCTATATACAGTGATGCCTATGCCTTGATCAAGCAGAACAAAACTTCACGCGAGTGA 1416 0.4308 MKAIGQQPQNGFPFGREEEIKEEQGVVVNENAPLLPKSQVQESDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMVPGIVAIIIMALLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALVQLCVIINNIGVLIVYMIIIGDVLSGTSSSVDHHYGILEGWFGVHWWTGRTFVVLFTTFAIFAPLASFKRIDSLRFTSALSVALAVVFLVIAVGIAIIKIISGGIGMPRLFPVTTDVASFFKLFTVVPVFVTAYICHYNVHSIDNELEDSSQMRGVVQTALVLCSSVYVMISFFGFLLFGEGTLDDVLANFDTNLGIPFGSVLNDAVRISYAAHLMLVFPVVFYPLRLNIDGLLFPSSRPLVLDNFRFASVTIALIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLRDRYNIATKSDKILSVVMIVLAVFSNVVAIYSDAYALIKQNKTSRE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0288 471 Pfam Transmembrane amino acid transporter protein 53 457 IPR013057 -
Ssu3g0288 471 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 18 466 - -
Ssu3g0288 471 PANTHER AMINO ACID TRANSPORTER 18 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0288 Ssu-Chr3 5116131 5119611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0288 32 471 Amino Acid or Auxin Permease AAAP Family AT3G30390 70.227 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0288 K14207 - gmx:100796345 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0288 3 5116131 5119611 Ssu3g0288 3 5116131 5119611 ECH
Ssu8g2157 8 56572722 56576647 Ssu3g0288 3 5116131 5119611 PCT