Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0276 atgggttCTTGTATAACGGGGAGGTTGATGAGTATTTGGACCTTGTCGATAACTGTAACTCTTGTGGCGATAATAATAACTTCACCTGCTGCTACTACTGATCATTACCCTCAGCACCAACATTTTGGTGGTGTTTCTCACCAGAAGAGTAGCTATGCTGGGGATAGTGTGGTTCCGGTTCAGCAACACCAGCATTTTCAGCTTGGCTTGGAGTTTGACAACTCCAAAGCTGCCTTCAGTTACAGTGGTTCTCTTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCTGATTCGATCATGAGGGATGTCTCAATTGCCCATTCAAGACCCTCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGATGCCTTCCCATCTTACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATagggagaaaaagaagacaAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGGCCCCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 624 0.4279 MGSCITGRLMSIWTLSITVTLVAIIITSPAATTDHYPQHQHFGGVSHQKSSYAGDSVVPVQQHQHFQLGLEFDNSKAAFSYSGSLSQSVSVSSMDVGVVPDSIMRDVSIAHSRPSKGTIDLFSGPPIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0276 207 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 41 207 - -
Ssu3g0276 207 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 41 207 IPR045281 GO:0009909
Ssu3g0276 207 Pfam CCT motif 138 180 IPR010402 GO:0005515
Ssu3g0276 207 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0276 Ssu-Chr3 4904685 4906873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0276 46 207 C2C2-CO-like Transcription Factor Family AT3G02380 57.714 9.90e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu3g0276 CCT 4.3e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0276 - - gmx:100301886 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0276 3 4904685 4906873 Ssu3g0276 3 4904685 4906873 ECH
Ssu8g2138 8 56192644 56195988 Ssu3g0276 3 4904685 4906873 PCT