Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0274 ATGGGGACTCCAGGAGGAATAGCAGCTCTTCTCAGTTTTACATTCTTCTTGTTTTGGAGCTCCTCAAATGCTTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGATTCTCTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGACTATGGTCACATGTTCTTCTGAAAACTTGGTCATTGGACTGGGCACTCCAAGTCAAAGTTTATCTGGTAACCTATCTCCTAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGACCAATCCCTTCAGAGCTAGGCAAACTTCCTAAGCTTCAAACCCTTGATCTCTCTAACAACTTCTTCAGTGGGGACATTCCACCCTCTCTGGGTCACCTGAGAAGCCTCCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAGTGCCCAGAGTCACTGGCTAACATGACCCAGCTTAATTTTCTTGATTTGTCATACAACAATCTCAGTGGCCCGGTGCCCAGAATTTTAGCCAAATCATTCAgCATTGTTGGAAACCCTCTTGTTTGTGCCACGGGAAAAGAGCCAAACTGCCATGGGATGACATTGATGCCTATGTCCATGAACTTGAACAATACTGAAGATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTCTGGGATGTCTCTGCCTCATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGGCACAAACACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACAAACAACTTCAGCAGCAAAAACATACTGGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTCCTCCCAGATGGCACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATTCAATTTCAGACCGAAGTTGAAATGATCAGCCTGGCAGTGCACCGAAACCTCCTCAGACTCTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCCCGTCTCAAGGGTAAGCCAGTTCTGGACTGGGGTACAAGGAAGCATATTGCTTTAGGAGCAGCAAGGGGACTACTGTACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGGGATGTGAAAGCTGCCAACATATTGCTTGACGACTATTGTGAAGCTGTAGTTGGAGATTTTGGATTGGCAAAGCTTTTGGATCACCAAGACTCACATGTCACAACTGCAGTGCGGGGCACTGTGGGGCATATTGCCCCAGAGTATCTATCCACAGGACAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCAGAGGGCTCTAG 1509 0.4473 MGTPGGIAALLSFTFFLFWSSSNALLSPKGVNFEVQALMGIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGNLSPSIGNLTNLQIVLLQNNNISGPIPSELGKLPKLQTLDLSNNFFSGDIPPSLGHLRSLQYLRLNNNSLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGKEPNCHGMTLMPMSMNLNNTEDALQSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGNVYKGVLPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGRGL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0274 502 SUPERFAMILY Protein kinase-like (PK-like) 281 500 IPR011009 -
Ssu3g0274 502 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Ssu3g0274 502 SMART serkin_6 304 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0274 502 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 500 - -
Ssu3g0274 502 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Ssu3g0274 502 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 11 500 - -
Ssu3g0274 502 Gene3D Transferase(Phosphotransferase) domain 1 381 502 - -
Ssu3g0274 502 SUPERFAMILY L domain-like 34 196 - -
Ssu3g0274 502 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Ssu3g0274 502 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Ssu3g0274 502 ProSiteProfiles Protein kinase domain profile. 304 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0274 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Ssu3g0274 502 Pfam Protein kinase domain 305 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0274 502 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0274 Ssu-Chr3 4860992 4863819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0274 10 500 Receptor kinase-like Gene Family AT5G16000 78.557 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu3g0274 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0274 - - gmx:100798412 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0274 3 4860992 4863819 Ssu3g0274 3 4860992 4863819 ECH
Ssu8g2136 8 56133168 56137432 Ssu3g0274 3 4860992 4863819 PCT