Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0257 ATGGCTGCAAACACCACGCCTTCACATTCAGGAGGGTTAAGTACTGGAGGATCTGTGGCTATTGGAATTGTGGTTGGTTTTGTTGTCCTCAGCATTCTTGTTATGGCCGTGTGGTTTgtacagaagaaaaagaagaaggataCAGGATCAAGAGGTGGTTATGCTGCTCCGTCTCCATTTACCTCATCCCACAATTCAGGTAGCTTATTCTTGAGGCCACAGTCTCCAGCCAACTTTGTAGGTAGTGGCTCTGGTAGTGATTTTGTGTATTCCCCATCAGAGCCAGGTGGAGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGGTTTTCGGCACAAAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTGCTCACTGATGGAAGGGAAGTAGCTGTGAAACAGCTCAAAGTTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCCTTGGTTGGTTACTGCATATCTGAGCATCAAAGATTGCTTGTATATGATTATGTTCCCAACAATACTCTTCACTATCATCTCCATGgTGAAAATAGACCAGTTCTGGATTGGCCTACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTTGATGATAACTATGAAGCTCAAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGGAAACTGACTGAAAAGTCTGATGTATATTCCTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGTGTCTCAACCAATTGGTGATGAAAGCCTGGTTGAATGGGCTCGGCCTCTGTTAACGGAAGCCCTTGATAACGAggactttgaaattttggtggATCCAAGACTGGAAAAGATCTATGATAGAAATGAAATGTTTCGGATGATTGAGGCTGCTGCAGCCTGTGTACGCCACTCGTCAGTGAAGAGGCCTCGTATGAGTCGGGTGGTGAGAGCTTTAGATTCCTTAGATGAGTTTTCGGATCTGAATAATGGAATGAAACCGGGGCAGAGTTCGGTGTTTGATTCTGCACAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCCAGTTTCTTCAATGAGTCTCAGAGTAGTTGGAGGAGTAGAGATCAGGACTCAACAACTATGTTCTCCCAAAATAAATCTGGGCCTTGGAATGTTTGA 1398 0.4278 MAANTTPSHSGGLSTGGSVAIGIVVGFVVLSILVMAVWFVQKKKKKDTGSRGGYAAPSPFTSSHNSGSLFLRPQSPANFVGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLTDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDDNYEAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPIGDESLVEWARPLLTEALDNEDFEILVDPRLEKIYDRNEMFRMIEAAAACVRHSSVKRPRMSRVVRALDSLDEFSDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDQDSTTMFSQNKSGPWNV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0257 465 MobiDBLite consensus disorder prediction 47 67 - -
Ssu3g0257 465 CDD STKc_IRAK 123 393 - -
Ssu3g0257 465 MobiDBLite consensus disorder prediction 439 465 - -
Ssu3g0257 465 SMART serkin_6 117 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0257 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Ssu3g0257 465 ProSiteProfiles Protein kinase domain profile. 117 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0257 465 Pfam Protein tyrosine and serine/threonine kinase 120 390 IPR001245 GO:0004672|GO:0006468
Ssu3g0257 465 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Ssu3g0257 465 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 4 440 - -
Ssu3g0257 465 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 440 - -
Ssu3g0257 465 Gene3D Transferase(Phosphotransferase) domain 1 193 410 - -
Ssu3g0257 465 Gene3D Phosphorylase Kinase; domain 1 93 192 - -
Ssu3g0257 465 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0257 Ssu-Chr3 4655840 4661090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0257 4 449 Trihelix Transcription Factor Family AT5G38560 71.711 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu3g0257 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0257 - - gmx:100784873 868.996