Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0254 ATGAAGCTTGCTAAGAGTGGACTGTTTAATGGAGATAGGAGCTTGAAGGAAATAGTTGATGAGGGGCATATCATAGTGGATAAACTCATAAACCATTCTTTGTTGTTGGAGAACGGGTATGGACGTATTGAAATGCATGGTCTGGTGAGGAACATGGTGTGCcatatcttgaacgagagtcaCAGTTATACTTATATGGtaaaatgtaatgaaaatttGAGAAAGATACCTCACATGCGGGAATGGACAGTTGATTTGGAGGCAGTTTCTTTGGCGagaaacaacataaaagaaatcCCAGAGGGCACATCACCAAATTGTCCACGCTTGTCCACCTTGATTTTATCTGATAATAGCATCAGTCATATTCCGGATGAGAGTCCTATTGATGATGAATTTAAGCGTCGAAGTGTATGCTTTAGAGATTGCGAAGAATTGCGCTATCTACTGCCCAGAGACCTCCGAAAATTGTCTATACGTGGCAATAATCAATGGGAATGCTTATGTTCTGCTCTGCCGTCTAATGGTCCTTCTTCTTTGAAGAATATTGAAATTACACAATGCACAAAACTGAAGAGCTTGTTTTGTTTATCCTGTTCCTCATGGACTAATATCCAATACCTTGAATCTTTGAAACTTGAAGGTTTGAATAGTTTAACTGCCATCTGTAAGGTAGATATTTCTGGTTTAACGCAAATTTTGTCTGGGATGATTATGTTCTCTCATCTCATGCATTTTGAAATCATGGAATGCAATAAAATAGAGACACTGCTGACTCCAGGGTTGGTGCAACAACTTCGAAACCTACAGTCTATAAATGTACAAAGATGTAATTCCATGAAGGAGATATTTGCAGTGAGTAACAGTGGTGATGATGATAGTTTCAACATTAAACTCCCCAAGTTGACCAGTTTGATTTTGAGCAATTTACCACAATTGACGACTGTGAGCAAAGGGATTTTAGTTTGTAGATCTGAGAATATATTGGATATCAAAAGCTGTCCCAAATTAGAAGGGCATCCAAGAATAAGTCTGATTGTTTCTGATAATTCGTATTCTGTATACGGACTTTTATTGGTACCAGTCCTAAGCGGTTCGAGGAAGAATaCCGTACTCGCCTATTTGAAAATTGAGGTGCTTGGTAATAGTCTTATTTACCCACTTTTTGGTGGGGAGAAGCGAACCGAGTCAGAGAAGAAACTTGATGGAAAGTATTTTGTGATGCTGCAGCGAGACAATGATTGGTATTGGAGGGCTTTTCTTCCTAAAGGGGAGGATAGAAACCATTCGGCCTGTAATCCTTTTGGCCCCAAAGGCAAAAGTATTACATGTCTCAAGTTTCTCAAAGGTCTTGTTTGTGTGGCCGGTTTGGAACTTTCCCAAGATTGGCAAATGAAATGTATGGAAAGGTCTCAAGAATTCTGGACACCAGTGTCAAAATTCTTTACCTAA 1452 0.3809 MKLAKSGLFNGDRSLKEIVDEGHIIVDKLINHSLLLENGYGRIEMHGLVRNMVCHILNESHSYTYMVKCNENLRKIPHMREWTVDLEAVSLARNNIKEIPEGTSPNCPRLSTLILSDNSISHIPDESPIDDEFKRRSVCFRDCEELRYLLPRDLRKLSIRGNNQWECLCSALPSNGPSSLKNIEITQCTKLKSLFCLSCSSWTNIQYLESLKLEGLNSLTAICKVDISGLTQILSGMIMFSHLMHFEIMECNKIETLLTPGLVQQLRNLQSINVQRCNSMKEIFAVSNSGDDDSFNIKLPKLTSLILSNLPQLTTVSKGILVCRSENILDIKSCPKLEGHPRISLIVSDNSYSVYGLLLVPVLSGSRKNTVLAYLKIEVLGNSLIYPLFGGEKRTESEKKLDGKYFVMLQRDNDWYWRAFLPKGEDRNHSACNPFGPKGKSITCLKFLKGLVCVAGLELSQDWQMKCMERSQEFWTPVSKFFT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0254 483 Pfam alpha/beta hydrolase fold 378 476 IPR013094 GO:0016787
Ssu3g0254 483 PANTHER GIBBERELLIN RECEPTOR GID1C-LIKE PROTEIN 372 480 - -
Ssu3g0254 483 SUPERFAMILY L domain-like 70 346 - -
Ssu3g0254 483 Gene3D alpha/beta hydrolase 353 479 IPR029058 -
Ssu3g0254 483 Gene3D Ribonuclease Inhibitor 63 175 IPR032675 -
Ssu3g0254 483 Gene3D Ribonuclease Inhibitor 190 349 IPR032675 -
Ssu3g0254 483 PANTHER ARYLACETAMIDE DEACETYLASE 372 480 - -
Ssu3g0254 483 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0254 Ssu-Chr3 4605204 4608976 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0254 377 469 Carbohydrate Esterase AT3G63010 62.366 2.32e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0254 - K14493 gsj:114397439 244.973