Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0251 ATGGATGCGCGTCGAGCTCCACGCGCCGTCATTGACCCTAAGGTCCGCAGAGTCGGGTTCTTCGCTCCGCCCGAACCCGACCCGACGATATCGTTCGAAGTCTCTCCCTCCGCCAACTCCCTCTCGCCGGTCATGATCCCGCCGCCGCGCCATTCGTCGGAAATTGTCGGCCTCCACGCTCGTCTCGCCGCGGATTCCCCTTCCGGCGAGGAATCCGTCGCCGCCGGGAGCTATTCCAGCTCGTCGGAGTTCTTCCCCGCTCCGGTGTCTCCGGCGCCCTCGAGCAGGATCGTCGCCGGCGACTTCTTCGACGGCGCTGCTTCTTCGCCCAGTCGCCGCGGCGGCGGCGGGAAGGTGGCGTCCTCGTTTCCTCGCGGCGGGTTTGACTTGACGGCGGTGAAGGCGAGTAGCGTTCCGGCGAGCGAGTTAACCACGGTTTCGGTGGTGAATGCTGCTTCCCTTGCGATTCGCGAAAGGGAGAAAGTGGGCAAAGGAGGAGGATCAGCAGTGGAAGTGAAAGACCAAGCTCTGAATACTaaacagaagaaagagaagaccTCAAAAGCTGAAAGACGAGCTCTTCAAGAAGCTCAACGAGCTGCTAAGGCTGCTGCAATAGCTGAAGGAAATAAGGCATCTGGAACTCTGGCTTCAGTGAATGTAAAACCAGCTAAAGCTGCAAAGCCCCCACAAAAAGTTGACAATGTTTCAGTTGCAGCCACTGAGAAGAAAGGGGGTGATCGTCCAccagaaaaagatagaaagaaagatgTTCCTCAACCACGCATGCAATATGATGATAAGAGCAGAGTGGAGAAAGCCAAACGGCGTGCTGTGGTAAAACAAACTGAAGCTAGGAACAGAGTTGAACTGTTCAGGCATTTGCCACAGTATGAACATGGGAGTCAGCTCCCAGATCTTGAGGCAAAGTTTTTCCAGCTTGATTCTGTGCATCCTGCAGTTTATAAGGTAGGTTTGCAGTATCTGTCTGGAGATATATCTGGTGGCAATGCTCGTTGTATTGCTATGCTTCAAGCATTTCAAGAGGCTATCAAAGACTACAGAATTCCATCTGAGAAGACTCTTGTCAGAGACTTAACAGCAAAAATAAGTAGTTATGTTTCTTTCCTCATCGAGTGTCGACCACTTTCTATCAGCATGGGGAATGCAATTAGATTTCTCAAAAGTCGAATTGCCAAGCTACCTCTGACGTTGTCTGAGTCTGAATCAAAAACCTCTCTTCAATCAGATATTGAGCGttttataaatgagaaaattataCTTGCCAACAAGGTGATAGTCAAGCATGCTGTCACAAAAGTAAGAGATGGTGATGTTCTTCTTACGTATGGGTCATCATCGGCAGTTGAAATGATACTCTTACATGCACATGAGTTAGGGAAACAGTTTCGAGTTGTAGTGGTAGACTCTCGTCCAAAACTTAGCGGCAAACTTTCGCTTCGTAGGCTGGTGGAGAAAGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACATAATGAATGAAGTTACTCGAGTCTTTCTGGGCGCTTCATCTGTGTTGTCTAACGGAACAGTTTATTCAGGAGTTGGGACTGCTTGTGTTGCAATGGTTGCTCATGCATTCCACGTCCCTGTTTTAGTATGCTGTGAGGCTTATAAATTTCATGAAAGGGTACAGCAGGATTCCATATGCTCAAATGAACTTGGTGATCCAGACGTCATTGCTACGGTTCGGAGTAGAGAGGATGGCAACCACTTGGAAGCTTGGGCCAATACTGAAAATCTGCAACTTCTAAATCTGATCTATGATGCAACGCCTTCAGATTACGTTTCCATGATAATCACAGATTATGGCATGGTCCCACCCACAAGTGTACCTGTAATTGTAAGGGAATATAGCAGAGAACAGGTGTGGATATGA 1929 0.4754 MDARRAPRAVIDPKVRRVGFFAPPEPDPTISFEVSPSANSLSPVMIPPPRHSSEIVGLHARLAADSPSGEESVAAGSYSSSSEFFPAPVSPAPSSRIVAGDFFDGAASSPSRRGGGGKVASSFPRGGFDLTAVKASSVPASELTTVSVVNAASLAIREREKVGKGGGSAVEVKDQALNTKQKKEKTSKAERRALQEAQRAAKAAAIAEGNKASGTLASVNVKPAKAAKPPQKVDNVSVAATEKKGGDRPPEKDRKKDVPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEAKFFQLDSVHPAVYKVGLQYLSGDISGGNARCIAMLQAFQEAIKDYRIPSEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLTLSESESKTSLQSDIERFINEKIILANKVIVKHAVTKVRDGDVLLTYGSSSAVEMILLHAHELGKQFRVVVVDSRPKLSGKLSLRRLVEKGLSCTYTHINAVSYIMNEVTRVFLGASSVLSNGTVYSGVGTACVAMVAHAFHVPVLVCCEAYKFHERVQQDSICSNELGDPDVIATVRSREDGNHLEAWANTENLQLLNLIYDATPSDYVSMIITDYGMVPPTSVPVIVREYSREQVWI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0251 642 MobiDBLite consensus disorder prediction 20 46 - -
Ssu3g0251 642 MobiDBLite consensus disorder prediction 157 198 - -
Ssu3g0251 642 MobiDBLite consensus disorder prediction 72 88 - -
Ssu3g0251 642 MobiDBLite consensus disorder prediction 176 197 - -
Ssu3g0251 642 Pfam Initiation factor 2 subunit family 333 625 IPR000649 GO:0044237
Ssu3g0251 642 MobiDBLite consensus disorder prediction 244 279 - -
Ssu3g0251 642 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 3 642 - -
Ssu3g0251 642 SUPERFAMILY NagB/RpiA/CoA transferase-like 290 635 IPR037171 -
Ssu3g0251 642 MobiDBLite consensus disorder prediction 65 122 - -
Ssu3g0251 642 Coils Coil 180 200 - -
Ssu3g0251 642 Gene3D - 428 635 IPR042529 -
Ssu3g0251 642 MobiDBLite consensus disorder prediction 222 279 - -
Ssu3g0251 642 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 3 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0251 Ssu-Chr3 4576000 4583008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0251 1 642 Eukaryotic Initiation Factors Gene Family AT5G38640 65.465 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0251 K03680 - gmx:100785938 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0251 3 4576000 4583008 Ssu3g0251 3 4576000 4583008 ECH
Ssu3g0251 3 4576000 4583008 Ssu8g2095 8 54972951 54974705 ECH