Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0250 ATGTTCCCTTCAACTAATTACACCTCCTCAGGCTCTTACCCTCGTTTccatcctcctcctccttcctcACCGTTCCCTTCCTTTACTTTCCTTCACCCTGAAAATTCTTCTCACAGCAACACCGTTCTTCATGATCCACTTGCTCTTACCTATATGCCAACTCATTATCATGCTCCAATCCCAGAAACACTAGCCAATTGGGCAGTTGCAGATTGTGCTGCTGCAGCAATGCTCAATCAGGATCTCAGTGGTGCCCTTTATGGCATCACCAAGAAACCAGCGAAGAAAACAACCAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGGGACCGAAGGGTGAGGTTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAAGAAGGCAATTAAGGAGCTAACTCGAAGCAAGCACAGTGTTGATAGCTTCTCCTCATCTTCGGAGGCTGAAGTGGTTTCTATGATCCACCAAGacctacaacaacaacaacaacaaagggTAGATTTGGAAGAGGGGAAGTTGAAAGAACCTGCTAATTGTTTTAGAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTAGCAAGGTGTTGTGCAACATAAGTGGCCAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAATCCTCAAATCCTGCACCAATTTAGGCCTCCCCTTCAACCTCAGCCTCTAGATGTGGGTGGTGAAGTGCCAAGAGATGATGATTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGCTGAAGCACACTTTGATGTCTTCCATTCACCAAAACGTTGTGATCCCTAAAGAAGCAAGTGTAAACAACAGTGACTTCCACTCCTTCCCCAATTTGTCTCCAAATTGGGAAGCTAATAATGCTGCCACTGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTATCAACAgGGCttcaaatttttggaaaatcttGGGAGGAGTGCACCAATCCTCATCAAAGCTAA 1101 0.4278 MFPSTNYTSSGSYPRFHPPPPSSPFPSFTFLHPENSSHSNTVLHDPLALTYMPTHYHAPIPETLANWAVADCAAAAMLNQDLSGALYGITKKPAKKTTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVDSFSSSSEAEVVSMIHQDLQQQQQQRVDLEEGKLKEPANCFRAKMKESREKARARARERTSSKVLCNISGQGKVQELKKKCPATENPQILHQFRPPLQPQPLDVGGEVPRDDDFNVIEESIVIKRKLKHTLMSSIHQNVVIPKEASVNNSDFHSFPNLSPNWEANNAATGRSTFCAIASMNLSTGLQIFGKSWEECTNPHQS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0250 366 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Ssu3g0250 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 365 IPR005333 GO:0003700
Ssu3g0250 366 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 9 365 - -
Ssu3g0250 366 Pfam TCP family transcription factor 97 227 IPR017887 -
Ssu3g0250 366 ProSiteProfiles R domain profile. 210 227 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0250 Ssu-Chr3 4551076 4552286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0250 42 252 TCP Transcription Factor Family AT1G67260 39.013 7.44e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu3g0250 TCP 1.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0250 - - gsj:114424268 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0250 3 4551076 4552286 Ssu1g1962 1 54980013 54981574 ECH
Ssu3g0250 3 4551076 4552286 Ssu6g1112 6 18183512 18184921 ECH
Ssu3g0250 3 4551076 4552286 Ssu3g0250 3 4551076 4552286 ECH
Ssu3g0250 3 4551076 4552286 Ssu8g2093 8 54926793 54928125 ECH