Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0241 ATGGCTCTGGACCAACCTTCGAATCCCAACTCCACTGACGCTGGCGGTAACGGCGCGGCGCCGTGCTCCGCCGCGGACGGTGGCGACGATGGGAGACCGGCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGCGACGCGGAGAGCCGGTTCAGGCCGGGTCGCGGCGGCGGCGGCTCGGCGTTCGGCTCGAGCGAGCCGAAATGGGCGCTGGTGTCGGCGTACTGCAAGAAGCACGGCGTGAACCGGGAACCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTCAGGGACGAAACGGAGTCGTTTTGGCTCATGAGGAACGATTTGAGGAGGGAGAAGAAATTGCCCGGTTATTTTGACAGGGAAGTATATAATATTCTCGATTCGCCGTCcacggcggcggcggcggagaCTCCGGTGGCCGCGGCGGCGGTGGATGAGGAGTTGCACCTGTATGATAGTAATCGGAGGGTGGGGGGTGAGGATGGGTTGTTCTCTGATTGTGAGAAGGACGAGGTTTTACTTTTAGCCGCTGCCAAGGATGTTCCTGCACCTGTTCCTATCTCAGAGAAGCAATATCAACCGCTCCTCCAGGGCTGCGAAGGGGAAGGCAATGCTCAAGGTGCTACCAATGAGAAACGGCCAGCCTCAAATCCAGAAATGGGTTCTACATCTCAAGGGGGACGGAAGAGGAAGCGGTTTGCAACCGATGAAGAGGAGGAAACTTTGCAAAGTCAACTAATTGATGTCTTAGAAAAGAATGGCAAAATGCTACGTGACCAACTTGAAGCTCAGAACATCAATTTCCAATTGGATCGCCAGCAGCAGAAAGACACTGCAAGTAACATAGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 972 0.5453 MALDQPSNPNSTDAGGNGAAPCSAADGGDDGRPAARLPRWTRQEILVLIQGKSDAESRFRPGRGGGGSAFGSSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRREKKLPGYFDREVYNILDSPSTAAAAETPVAAAAVDEELHLYDSNRRVGGEDGLFSDCEKDEVLLLAAAKDVPAPVPISEKQYQPLLQGCEGEGNAQGATNEKRPASNPEMGSTSQGGRKRKRFATDEEEETLQSQLIDVLEKNGKMLRDQLEAQNINFQLDRQQQKDTASNIVAVLDKLADALGRIADKL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0241 323 Coils Coil 270 301 - -
Ssu3g0241 323 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 323 - -
Ssu3g0241 323 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 1 323 - -
Ssu3g0241 323 MobiDBLite consensus disorder prediction 53 72 - -
Ssu3g0241 323 Gene3D - 40 109 - -
Ssu3g0241 323 Pfam Myb/SANT-like DNA-binding domain 39 127 IPR044822 -
Ssu3g0241 323 MobiDBLite consensus disorder prediction 232 247 - -
Ssu3g0241 323 MobiDBLite consensus disorder prediction 221 261 - -
Ssu3g0241 323 MobiDBLite consensus disorder prediction 1 38 - -
Ssu3g0241 323 MobiDBLite consensus disorder prediction 1 17 - -
Ssu3g0241 323 ProSiteProfiles Myb-like domain profile. 32 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0241 Ssu-Chr3 4282692 4285944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0241 39 112 Trihelix Transcription Factor Family AT1G33240 33.784 1.70e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu3g0241 Myb_DNA-bind_4 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0241 - - gmx:100788594 551.592