Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0240 ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAGTGCATGGAGGAAAGTGCTGAATCTTTaagagagagaagtttaaaattttacaaaggaTGTAGAAAATACACTGAAGGGCTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGTGGGCATAATGATCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCGTTAAGAGAAATTGGGACATACAAGGAGGTCCTTCGATCACAGGTTGAACATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCaagGAAGCACGAAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCGCTGAGAAAAGGCACAAAAACTGATGTAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTTCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCATACATTAACCAGGTcttgacttatgctcagcaaTCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTAAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGGGAGAGTAGGTGGGCTTCAAATGGCTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGAGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGTCAACATTCGAGCCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTAGATGCTGATCAAACAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTACAGGCAGAAAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGGTTCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACAAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGTAGCAGATAGAAGTCTTGTTTCTGCGCATCCTGAGCGCCTCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAAGTGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGCGTACATCGTAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTGTGGGAGGAATTATTACAATCAAGAAGTGCCTTTCAGCTTAAGCAAGACCGATAA 1797 0.414 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTSLSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSSQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQTDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQVPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECVADRSLVSAHPERLSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQLKQDR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0240 598 SUPERFAMILY ArfGap/RecO-like zinc finger 500 590 IPR037278 -
Ssu3g0240 598 MobiDBLite consensus disorder prediction 447 461 - -
Ssu3g0240 598 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 594 - -
Ssu3g0240 598 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Ssu3g0240 598 Gene3D - 285 438 IPR011993 -
Ssu3g0240 598 Pfam BAR domain of APPL family 6 233 - -
Ssu3g0240 598 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Ssu3g0240 598 MobiDBLite consensus disorder prediction 248 270 - -
Ssu3g0240 598 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Ssu3g0240 598 CDD PH_ACAP 295 432 - -
Ssu3g0240 598 MobiDBLite consensus disorder prediction 438 461 - -
Ssu3g0240 598 Gene3D Arf GTPase activating protein 486 598 IPR038508 -
Ssu3g0240 598 MobiDBLite consensus disorder prediction 253 269 - -
Ssu3g0240 598 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Ssu3g0240 598 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Ssu3g0240 598 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Ssu3g0240 598 Coils Coil 227 247 - -
Ssu3g0240 598 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Ssu3g0240 598 SMART arf_gap_3 500 598 IPR001164 GO:0005096
Ssu3g0240 598 SUPERFAMILY PH domain-like 293 444 - -
Ssu3g0240 598 Pfam PH domain 294 427 IPR001849 -
Ssu3g0240 598 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 598 IPR001164 GO:0005096
Ssu3g0240 598 SMART PH_update 293 430 IPR001849 -
Ssu3g0240 598 Pfam Putative GTPase activating protein for Arf 503 590 IPR001164 GO:0005096
Ssu3g0240 598 CDD BAR_SFC_plant 14 215 IPR035670 -
Ssu3g0240 598 PANTHER CENTAURIN/ARF 1 594 IPR045258 GO:0005096
Ssu3g0240 598 CDD ArfGap 503 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0240 Ssu-Chr3 4266941 4274703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0240 512 591 C2H2 Transcription Factor Family AT4G21160 51.852 9.88e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0240 K12489 - gmx:100798227 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0240 3 4266941 4274703 Ssu3g0240 3 4266941 4274703 ECH