Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0239 ATGTTTAGGAAAAGACACACCCCTTCTTCTCTTGCCAGGGAATTGTTGGCATTCCGAccactttttcttctcttcttgttcAGCTTGCACCACAACACTGTGCAGTGTCAAGGAAGGTTGAGTAAACATGTTTCTTCTGAGCCTCCCTCACCTTCTAGGCcttcatcaccaccaccaccatcatcatcaggATACAAGGATGACCCTAGGAAGATCATTGTTAGCATGGTTTTAGGAGCAGTCACTGGACTAGTTTGTTCTGTTCTCTTTGCACTCGTGGTTCGTTGTGTTGTTCAGTATCTGAACCGCACACCAATCCTCAAGGGCCCTGTCATATTCTCCCCCAAAATTGCCCCCAAGACACTCCAATCAGCTTTGGCAAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGTAAGTACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCCCCGGAGGCTAAGAGAAACTCAGTGAAGAGGCAGATACAAAGTGAGCTAGAGCTTCTTGCCAGCCTAAGACATAGGCACTTGATGAGTTTGAGGGCCTATGTTCGTGAGCCTGAAGGGTTCTCATTGGTTTATGATTATGTGTCTACTGGAAGTCTTGCAGATGTGATGAATAGAGTGAGGGAGAATGAGTTGCCCTTTGGTTGGGAAGTTAGGCTGAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGTACGTCAGATTCTGCACTACAACTTGAAGCCCACAAATGTGATGTTGGATGCTGAGTTTGAACCCAGATTGGCAGATTATGGGTTGGCTAAACTTCTACCCAACTTGGATAGAGGAACATCTCTTTACACCCCTCCTGAATGTTTCCATAATTGCAGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACGGGTAAGGACACTACAGATCCATTCTTTGGAGAAGCAGCCAGTGGGGGAAGTTTGGGATGTTGGTTGAGACACTTGCAACAAGCCGGCGAGGCACGCGAAGCTCTAGACAAGAGCATGTTAGGGGAAGAAGGGGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTATCTGATATGCCTGCAGATAGGCCTTCTAGTGATGAGCTTGTTCACATGCTAACACAACTGCACAGTTTTTGA 1230 0.4407 MFRKRHTPSSLARELLAFRPLFLLFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSSPPPPSSSGYKDDPRKIIVSMVLGAVTGLVCSVLFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQSALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFESNSPEAKRNSVKRQIQSELELLASLRHRHLMSLRAYVREPEGFSLVYDYVSTGSLADVMNRVRENELPFGWEVRLRIAVGVVKGLQYLHFTCVRQILHYNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDTTDPFFGEAASGGSLGCWLRHLQQAGEAREALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0239 409 PANTHER - 12 409 - -
Ssu3g0239 409 ProSiteProfiles Protein kinase domain profile. 127 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0239 409 CDD STKc_IRAK 133 406 - -
Ssu3g0239 409 SUPERFAMILY Protein kinase-like (PK-like) 130 403 IPR011009 -
Ssu3g0239 409 Pfam Protein kinase domain 129 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0239 409 MobiDBLite consensus disorder prediction 40 67 - -
Ssu3g0239 409 Gene3D Phosphorylase Kinase; domain 1 116 210 - -
Ssu3g0239 409 Gene3D Transferase(Phosphotransferase) domain 1 211 408 - -
Ssu3g0239 409 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 12 409 - -
Ssu3g0239 409 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0239 Ssu-Chr3 4257929 4259832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0239 73 406 Receptor kinase-like Gene Family AT2G31880 34.366 9.86e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Ssu3g0239 Pkinase 3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0239 - - gmx:102664172 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0239 3 4257929 4259832 Ssu3g0239 3 4257929 4259832 ECH