Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0238 ATGTGTTCTCTACTTTGGAGTTCCATTGCAATGTGTGTAGCAGTCTTACTCCTTCACCCTGGCATTGTACACCCTTCACCCTCTCACCTTAGGATCACTCGTTTACCGGGTCAACCCCATGTTGAGTTTCATCAGTTTTCAGAGGCGAATATGCTGTATTTGGAAACGCCAATTGGAGTTGGATTCTCTTACTCAACTGATACTTCCTCTTATGAGGGTGTGAATGACAAAATTACAGGCAAGTTTTTGATGTTCACCCTTCTATTTGACATCACCGGGGATAACTTGGTGTTCTTGAAAAACTGGTTTATAAAGTTCCCAGAATACCGAAACAGAAGTTTGTTCATTGTAGGAGAAAGCTATGCCGGCCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGAAACAGATTTCAATTCGAGAGCCGAGTTCTTCTGGTCACATGGATTAATTTCAGATTCAACGTACAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAATGGTGCTGTTTCTCCCATCTGTTCAAGTGTTATGAGCCAAGTTAGCACAGAAACCAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTTTATCTTCAGTGTTCTCACAAACCAAAGTTCTCAATCCCCAGCAAGTCACTGAAACTATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAACAGAAAAGATGTGCAGTCAGCTTTACATGCGTGTTTGGTTGGAGTTCAAAGATGGTCTGCTTGCAGCAATGTCCTGGATTATGAGCTGCGTGACTTGGAGATACCAACAATCACTGTTGTGGGGAAGTTAGTCAAGGAGGGAATACCAGTATTGGTTTACAGTGGTGATCAGGATTCAGTTATCCCACTGACCGGAAGTAGAACATTAGTACATAAATTGGCGAAAGAACTAGGATTGAAGACCACTGTGCCATACAGGGTGTGGTTTGAGAAGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTGACATCCTTTCATTTGCCACCATCAGGGGAGCATCACATGAGGCTCCATTTTCACAGCCTCAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGACGACCTCTACCACAAGAGTTTTGA 1215 0.4189 MCSLLWSSIAMCVAVLLLHPGIVHPSPSHLRITRLPGQPHVEFHQFSEANMLYLETPIGVGFSYSTDTSSYEGVNDKITGKFLMFTLLFDITGDNLVFLKNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFETDFNSRAEFFWSHGLISDSTYKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHACLVGVQRWSACSNVLDYELRDLEIPTITVVGKLVKEGIPVLVYSGDQDSVIPLTGSRTLVHKLAKELGLKTTVPYRVWFEKQQVGGWTQVYGDILSFATIRGASHEAPFSQPQRSLVLFKSFLEGRPLPQEF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0238 404 Gene3D alpha/beta hydrolase 43 401 IPR029058 -
Ssu3g0238 404 SUPERFAMILY alpha/beta-Hydrolases 47 401 IPR029058 -
Ssu3g0238 404 ProSitePatterns Serine carboxypeptidases, histidine active site. 367 384 IPR033124 GO:0004185
Ssu3g0238 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 102 127 IPR001563 GO:0004185|GO:0006508
Ssu3g0238 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 367 380 IPR001563 GO:0004185|GO:0006508
Ssu3g0238 404 PRINTS Carboxypeptidase C serine protease (S10) family signature 54 64 IPR001563 GO:0004185|GO:0006508
Ssu3g0238 404 PANTHER CARBOXYPEPTIDASE 48 402 - -
Ssu3g0238 404 PANTHER CARBOXYPEPTIDASE 6 47 - -
Ssu3g0238 404 Pfam Serine carboxypeptidase 48 397 IPR001563 GO:0004185|GO:0006508
Ssu3g0238 404 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 48 402 IPR001563 GO:0004185|GO:0006508
Ssu3g0238 404 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 47 IPR001563 GO:0004185|GO:0006508
Ssu3g0238 404 ProSitePatterns Serine carboxypeptidases, serine active site. 116 123 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0238 Ssu-Chr3 4251263 4254357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0238 260 400 Calmodulin-binding Proteins AT2G22960 26.241 1.17e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0238 K16297 - gmx:100805130 662.529