Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0235 ATGACCATGGTTCCTTCTCAAAACGGGAAACAAAATAGGAGCAGTGGTGATTACGTTATTTGCGGCAACACAACAACGAGTAGTGCTATGAACCAAGTTGAAGTTGAAGGAGGCTACAATTGCTTATTAGGATCTGATTTTGCCGTGAGGAGGCACATGGCTGGGACTGAAGAATCATCGAGACACAACCCCACAGCTAACGAGGAAGCTGAAGCTGGCGGTTCCACctcaaaggaagaagaagaaggaggaggaggaacaaacaacaacaataactgGCTTCAATTAAGCATAGGTTTGACAAGCGCCAAGCAAGACGGTGATCGAACCGTTCCAATAACAACCGGTTCAGGGCTCGTGGAGTTGGACCTGCTTCCTTCGCGGAGGAGCTCGGAGCAGCCGCCTGCGATTTTTCCGGTGGCGGCGTCAGGGAGAGGAGGAGGGTCTAGTTTTGGTGGTTCTTCTTCTTTGCTTTTGGAACATCAAACGGCGTCGTCTTCGTCTTCCTTGTCCGTGTCTATGGCAAGTGGTCCAATTACCTCAACCTTCGGTCATCAAGAGATGATGAACTGGGCATTTGGTCCACTACTTCCTCATTCTATGCCTATTATGCCCTCTCCTTCCTCTTTCActcctcttccttcttcttcttcttcttcctcgtCGCAGTCTTGTTACTCTTCCTTGAGGCCTCCCTTAGGGCCTTACTTTCCAACGCCCTTTCATCACTTCCCTTCTTCTTCCGGGTTTGATCAATACGACGTGGCCGGGGCAGGACCGAGCTCCGATGTCACCGTTCGAGTTGTTGATCCTCCTAGGAGACCCCATTCTGGAATATGGTTTATGTTACAAGCCTCTCAAAATCAAGCGAAAGAACCATTCTTGCCTCAAATACCTAAGAACTACCTTAGAATTAAAGACGGAAGGATGACAGTTCGGTTGCTATTGAAGTATCTGGTTAGCAAACTCAGACTGGAGAGCGAATCGGAGATAGAGATAACATGCAGAGGGCAGCAACTTTTACCTTTCTTGACGTTACAACATGTGAGGGATAACATTTGGACTCCGAGGGACACCACACGAGCTTTGCTTTCAGATTCCTCAACCACGGATCATGTCATGGTGCTCCATTACGGTAGAAGCACTACTTAA 1152 0.4497 MTMVPSQNGKQNRSSGDYVICGNTTTSSAMNQVEVEGGYNCLLGSDFAVRRHMAGTEESSRHNPTANEEAEAGGSTSKEEEEGGGGTNNNNNWLQLSIGLTSAKQDGDRTVPITTGSGLVELDLLPSRRSSEQPPAIFPVAASGRGGGSSFGGSSSLLLEHQTASSSSSLSVSMASGPITSTFGHQEMMNWAFGPLLPHSMPIMPSPSSFTPLPSSSSSSSSQSCYSSLRPPLGPYFPTPFHHFPSSSGFDQYDVAGAGPSSDVTVRVVDPPRRPHSGIWFMLQASQNQAKEPFLPQIPKNYLRIKDGRMTVRLLLKYLVSKLRLESESEIEITCRGQQLLPFLTLQHVRDNIWTPRDTTRALLSDSSTTDHVMVLHYGRSTT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0235 383 Gene3D - 273 378 - -
Ssu3g0235 383 MobiDBLite consensus disorder prediction 54 93 - -
Ssu3g0235 383 PANTHER RING FINGER PROTEIN 1 381 - -
Ssu3g0235 383 PANTHER RING FINGER PROTEIN 1 381 IPR044171 GO:0007275
Ssu3g0235 383 MobiDBLite consensus disorder prediction 126 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0235 Ssu-Chr3 4191695 4200836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0235 292 379 C3H Transcription Factor Family AT3G23060 38.043 1.28e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0235 - - gmx:102664960 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0235 3 4191695 4200836 Ssu3g0235 3 4191695 4200836 ECH