Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0233 ATGTCCAAGAAGGTCAAGGCTCGCAAGCTCACCCTCACGCATTTCAACCACGCCGATCACCAGCACGCCAAGAAAACGACGTCGTCGTCGCCGCCACCGCATCCCAAGCCCCCTCTCCTCTACGTCTACTCCCGCCGCCGCAAGAGGCACTCCTCCTCCCCGACGTCGTTTTACGATTCGCTCCATAAGAGCGAGGGCGCGGAGACCGAGGCCGAGAAGAGGTTGCTGAAGAAGAGGAAAATCGGGAGCACCGAGTTGGAGAGGTTGGGCGTGGATTTGAACGCCGCGGCGGATGGGCCTCGATTGAGGGAATGTCGAAACCAATTTGGGAATTCCGGTGCTGCTGGGAACGTTAAGTGTGGTTCCTTGGACAATTTGCCCAAAATGTTGCCTGAATCTCGCGCTGTGAAGAAATGGGTCGGGTTAAGTTTTGATAATGCTGATCCCGAGGCATTTGTTGGATTACGATGCAAGGTTTATTGGCCCATGGATTTAAAATCGTACACTGGCTATGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAgtatgatgatggtgatgaggaaaatttaattctttcaaatgaaaatataagattCCATGTTTCCCGCGATGAGATGAAatgcttaaaattgaattttgccAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCACTGGCTGCAAGTTTGGATGATTGTCAAGAATTTGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCGGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAGAAGCTTCCGTTGGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGACTGTAACAATGTAAGCGGAGAGGACGGAGGATGTACAGATTCAGGTGATTCTTTAAATGACAAGGAGACTTTGGTGGCTCTGGAAAACATTGAAACTTTTCCTTATGAAGTAGGAGACCTCCAAATTCTAAGCCTTGgaaaAATAGTTGAAGATTCTGCATTTGGGGATGGAAGATTCATCTGGTCTGAAGGGTACACGGCAGTGAGGAAGTTTACTTCAGTTActgACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTCCGTCCTCTGTTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAACGGTTATACACCATCTGCTTGCTGGAGTGAGGTATACAAAAGgataaagaaaatggaaaaggatGCTTCTGAAGGGACTGTTGCTGAAGGTGGGGTAGAAAAGGGCTACGAATCTGGGTCTGATATGTTCGGTTTCTCCAATCCTAAAGTAGTTAAACTTATACAGGCATTGTCTAAATCCAAACTCTCTTTGAAGAACTCAATTTGCAAGTTAGGTTCCAGAAGATATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAATATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGGGTGCTATGGTTATGCAACTTATGTCGTTTGGGTGCTCCTCCTCCACCTTGCTGTTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCATTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAgcTTGAGAATGAGGACAGGCTCTATCTACTTTctgttgatgatgatgaagatcaGTGCATACGCTTACTTTCATTCTGCAAGAAACACAGGCAGCCATCTAATGAACATTCTGTTGCTGATGAACGTATAGTTCGAGTTGCTGGTCAATGTTCAGACTATGAGCCCCCACCCAATCTGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGTTTATTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGATCGTTAAATAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAGCAAAGGCTGAGAACCTCTCTGATTGACACTTCAAACAGCATACTTTCTATTGCTGAAAAATATAAGTACATGAGGGAAACCTTTCGGAAACGGCTGGCATTTGgGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGgTGATTGAATACACTGGTGAACTTGTTCGACCCCCTATAGCTGACCGGAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCTGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATAAGTGTTAATGGCGATGagcatattataatatttgcaAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCGATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAGTGTCGAGGTATAGTAAATGATACTGAGGCAGAGGAACGAGCTGCTACCCTATATGCACCACGAAGTGAATTAATAGATTGGATAGGAGAATGA 3084 0.4222 MSKKVKARKLTLTHFNHADHQHAKKTTSSSPPPHPKPPLLYVYSRRRKRHSSSPTSFYDSLHKSEGAETEAEKRLLKKRKIGSTELERLGVDLNAAADGPRLRECRNQFGNSGAAGNVKCGSLDNLPKMLPESRAVKKWVGLSFDNADPEAFVGLRCKVYWPMDLKSYTGYVRSYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEMKCLKLNFAKVRDNNVSDYDVEEMLALAASLDDCQEFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADDCNNVSGEDGGCTDSGDSLNDKETLVALENIETFPYEVGDLQILSLGKIVEDSAFGDGRFIWSEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKVRPLFRVTVDGGEQFNGYTPSACWSEVYKRIKKMEKDASEGTVAEGGVEKGYESGSDMFGFSNPKVVKLIQALSKSKLSLKNSICKLGSRRYNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRLGAPPPPCCLCPLIGGAMKPTTDGHWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADERIVRVAGQCSDYEPPPNLSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNLEPSGRGVCSKFFCSQQRLRTSLIDTSNSILSIAEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWIGE 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0233 1027 SMART fyrc_3 454 548 IPR003889 GO:0005634
Ssu3g0233 1027 Gene3D - 150 204 - -
Ssu3g0233 1027 SUPERFAMILY Tudor/PWWP/MBT 242 343 - -
Ssu3g0233 1027 Pfam PHD-zinc-finger like domain 615 736 - -
Ssu3g0233 1027 ProSiteProfiles SET domain profile. 863 981 IPR001214 GO:0005515
Ssu3g0233 1027 SMART PHD_3 671 737 IPR001965 -
Ssu3g0233 1027 SMART PHD_3 561 608 IPR001965 -
Ssu3g0233 1027 ProSitePatterns Zinc finger PHD-type signature. 562 607 IPR019786 -
Ssu3g0233 1027 Gene3D - 236 347 - -
Ssu3g0233 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 611 IPR013083 -
Ssu3g0233 1027 SMART PWWP_4 246 309 IPR000313 -
Ssu3g0233 1027 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 31 1024 - -
Ssu3g0233 1027 CDD PHD_ATX1_2_like 561 607 IPR042010 -
Ssu3g0233 1027 Pfam SET domain 874 980 IPR001214 GO:0005515
Ssu3g0233 1027 CDD ePHD_ATX1_2_like 622 736 IPR041956 -
Ssu3g0233 1027 Gene3D - 389 528 - -
Ssu3g0233 1027 MobiDBLite consensus disorder prediction 1 40 - -
Ssu3g0233 1027 ProSiteProfiles Extended PHD (ePHD) domain profile. 613 737 IPR034732 -
Ssu3g0233 1027 SMART fyrn_3 402 446 IPR003888 GO:0005634
Ssu3g0233 1027 SUPERFAMILY FYVE/PHD zinc finger 553 623 IPR011011 -
Ssu3g0233 1027 SMART set_7 863 987 IPR001214 GO:0005515
Ssu3g0233 1027 Pfam F/Y rich C-terminus 452 526 IPR003889 GO:0005634
Ssu3g0233 1027 Gene3D SET domain 816 1015 IPR046341 -
Ssu3g0233 1027 CDD SET_SETD1-like 851 999 - -
Ssu3g0233 1027 SUPERFAMILY SET domain 860 1000 IPR046341 -
Ssu3g0233 1027 Pfam PWWP domain 249 336 IPR000313 -
Ssu3g0233 1027 Pfam F/Y-rich N-terminus 394 443 IPR003888 GO:0005634
Ssu3g0233 1027 ProSiteProfiles FYR domain FYRC motif profile. 450 536 IPR003889 GO:0005634
Ssu3g0233 1027 Pfam PHD-finger 574 608 - -
Ssu3g0233 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 739 IPR013083 -
Ssu3g0233 1027 PANTHER PHD FINGER PROTEINS 31 1024 - -
Ssu3g0233 1027 ProSiteProfiles Post-SET domain profile. 987 1003 IPR003616 -
Ssu3g0233 1027 ProSiteProfiles Zinc finger PHD-type profile. 559 610 IPR019787 -
Ssu3g0233 1027 ProSiteProfiles PWWP domain profile. 248 311 IPR000313 -
Ssu3g0233 1027 ProSiteProfiles FYR domain FYRN motif profile. 388 446 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0233 Ssu-Chr3 4143826 4155582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0233 562 707 C2H2 Transcription Factor Family AT3G14740 38.411 1.53e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu3g0233 zf-HC5HC2H_2 1.2e-32 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0233 - - gmx:100808923 1904.41