Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0227 ATGAAGGTGGGAGAATGCTTGAAGGGGAAAAAGTACCTGGTAGTTCTTGATGACATCTGGAAAACCCAAGTATGGGATGAGGTTAGAGGTGCCTTTCCAGATGACCAAAACGGTAGTAGAATACTGATAACTAGTCGTATGAATGAGATGGCTCACTATACAGGAACCATGCCTCCCTACCACCTTCCCTTCCTCAACAAACAGGAAAGTTGGGAACTGTTCTCTAAGAAGGTGTTTCGAGGTGAAGAATGTCCATCTGATTTAGAGCCTTTGGGTAGATCTATTGTTGAAACTTGTAGGGGTTTACCACTTGCCATTGTGGTCTTAGCTGGACTCGTTGCCAAGAAGGAGAAGTCACAAAGAGAGTGGTTGAGAATCGAGGAGATTAGTTGGCATCTTACTCAGGACAAGACTGAAGTGATGAATATACTGAAGCTCAGCTACGACAGCTTGCCTCCAAGATTGAAGCCTTGCTTTCTGTATTTTGGAATCTATCCTGAAGACTATGAGATTAACGCAAGGCAATTGATCAAATTATGGATAGCTGAAGGGTTCATACAACCACAAGAAACTGGAATCCCAAATACAACAGAGCCCGAAGATGTTGCTGACTATTTCTTGGATGAGCTGGTGGATCGCAGCTTGGTGCAAGTGGCGAAAAGAAGAAGTGATGGTGGTGTCAAGACATGTCGCATTCATGATCTTCTCCTTGACCTTTGCATATCTGAGAGCAGATCAGGTAAGTTTCTGGAGGTTTGCACAGAGTTCAACATTGATACCCTGAGTAACACCAATCCCCGTAGATTGTCCTTGCATTGCCAACCGCATTATGATACGTTTGCACTTGGTAAATCCTGCACTCGTTCCTTCTTCATCTATTCTGGCAAGTGTCCAGAATATATTCAGAAAAGCTTCAAGTTGGCTCGTGTGCTACATTTTGAAAGGGAAACGTTTTCTTCACTAGACAGTAATTTGAAGAGGATGATCCATCTAAGGTACTTGAAAATATCTGGGATGTACAACTTTCTAGCTTCTATAAGCTGCCTTTGGAATCTGGAGACGCTGGATTTAAGAGCCTACAAAGGGATAATATCTAGGGAAATTTGGAAGCTTAAGCGGCTGAGACATCTTTATTTGAggggttttttaaattttccagAAGCAAAGGGGGAAAGAATGGAGAATCTCCAAACCCTTTCGATAAGGGGTGTGGAACAAAACATGATTTTCATGCTGAACAATGACTCGTTTCCTAGGTTGAGAAAATTAACTTTGGACAAATCGAAAGAATTACGAAGTCTACACCAGTTAAGCACTCTCCAGAGCCTAAAAATAACACTTAACAGTGTAGATTTACCACTTGCATCATACTCCACTGCATTTCCATCACATCTTACTAAGATAACCGTGAAGCTTGGACAATCACCCGAGGCTGATAGCTACTTTTTCACGAAGACACTAGGATGGCTTACCAACCTCCAAGTTTTGAAATTGCAACAAATTGAGCCAATATTTCCACAATCACCGCTTGAACTTCATACTGGCACTGGAGAATTCCCGCAGCTTCAAGTGTTTTATATGAGGGGAATATTCATCCGCGGGTGGACATTAGAGGAAGGTGCAATGCCCAGTCTTAGACATCTGGTCATCGACACATGTCATCACTTACGTGAACTTCCTGAACAACTCTGGTCATTGACTACCTTACAACTAGTGCATGTTGTGAAGCCCTACAGAGATTTGGCACCCAGCCTCGAAAATGTGGAGTTGAAGAATGGCTGTAAGCTcataattgagaaataa 1803 0.4187 MKVGECLKGKKYLVVLDDIWKTQVWDEVRGAFPDDQNGSRILITSRMNEMAHYTGTMPPYHLPFLNKQESWELFSKKVFRGEECPSDLEPLGRSIVETCRGLPLAIVVLAGLVAKKEKSQREWLRIEEISWHLTQDKTEVMNILKLSYDSLPPRLKPCFLYFGIYPEDYEINARQLIKLWIAEGFIQPQETGIPNTTEPEDVADYFLDELVDRSLVQVAKRRSDGGVKTCRIHDLLLDLCISESRSGKFLEVCTEFNIDTLSNTNPRRLSLHCQPHYDTFALGKSCTRSFFIYSGKCPEYIQKSFKLARVLHFERETFSSLDSNLKRMIHLRYLKISGMYNFLASISCLWNLETLDLRAYKGIISREIWKLKRLRHLYLRGFLNFPEAKGERMENLQTLSIRGVEQNMIFMLNNDSFPRLRKLTLDKSKELRSLHQLSTLQSLKITLNSVDLPLASYSTAFPSHLTKITVKLGQSPEADSYFFTKTLGWLTNLQVLKLQQIEPIFPQSPLELHTGTGEFPQLQVFYMRGIFIRGWTLEEGAMPSLRHLVIDTCHHLRELPEQLWSLTTLQLVHVVKPYRDLAPSLENVELKNGCKLIIEK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0227 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 162 IPR027417 -
Ssu3g0227 600 Pfam NB-ARC domain 3 149 IPR002182 GO:0043531
Ssu3g0227 600 Gene3D Ribonuclease Inhibitor 263 597 IPR032675 -
Ssu3g0227 600 Gene3D - 64 152 IPR042197 -
Ssu3g0227 600 Gene3D - 154 242 IPR036388 -
Ssu3g0227 600 PANTHER DISEASE RESISTANCE PROTEIN RP 2 598 IPR044974 GO:0006952
Ssu3g0227 600 Gene3D - 1 56 IPR027417 -
Ssu3g0227 600 PRINTS Disease resistance protein signature 6 20 - -
Ssu3g0227 600 PRINTS Disease resistance protein signature 347 363 - -
Ssu3g0227 600 PRINTS Disease resistance protein signature 99 113 - -
Ssu3g0227 600 SUPERFAMILY L domain-like 223 573 - -
Ssu3g0227 600 PANTHER - 2 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0227 Ssu-Chr3 3989786 3991588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0227 7 239 WRKY Transcription Factor Family AT5G45050 25.847 5.14e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0227 - - gmx:100801950 716.457