Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0226 ATGACTCAgGCGGTGGAGGTGCTGAATCGGTATGGGACGGATCTGGTGGGGGAAGCGAGGGGTTCTGACTCTGAGTGTATGACGGGTTTTGAGTGTTTTCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTGGTGGTAGTTCCCCTCCTCTTCTTCCTTATTCGGCTGAGTCCAATTTGGATGGTGGGAAGAGAAGGAGGTTGAAGGGTTCCTCTTCCTTTGATTTCAAAGTGCCTGGGAGGATGTTCTTGAATGGGTCAAGCGAGGTGGCATCCATGTATTGCAAGCAAGGAAAAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAGCTTTTGTTCAAAGGAGGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCACAGAGTTGCAAAGAAAGTTAGGGATTCTTTCCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAGTAGAGATGGACTCAGTGATCATAGCAGTGCCACAGGAAGTTATAAATCTGAAGGGACTGGATTTAGACTGGTTGATGAGAAAATTAGTCCCACTAATCATGAACTTGATGAAACAGATACTATTTTAACATTAAGAGAATCTTTTCTGAAGGCTTGTAAGATTATGGACAAAGAACTGAAACTGCATCCTGATGTTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAGCaaGGGCTGGACCTTGTTATTGGAAATGTTGGGGACTCAAGAGCTGTATTGGGTACCCGAGATCATGATGATTCCCTTATGGCTGTTCAGTTGACCATTGACcttaagccaaatcttccaaGGGAAGAAGAGAGGATCAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAGGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCACGGGCATTTGGAGATTTTTGCCTgaaggactttggattgattGCTGTTCCGGATGTCTCATATCATCGCATTACTGAGAAGGATGAATTTGTTGTATTAGCAACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTCGTGGACATTGTAGCATCTACTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCGAGCATGGAggacaaaatttcctttctgTAAGGTTGATGATTGTGCCGTGGTTTGCCTCttctttgattcaaattcaGATTTCAAGTCAACAGATACTGAAGACAAGTTGTTATGGGAGGCATCTATTGACCAATCTGAGCAGTTATCTTCACTTGATGAAAAGGGAATTGGattggaaaatgaaaaacagCTGCACTAG 1368 0.4203 MTQAVEVLNRYGTDLVGEARGSDSECMTGFECFLNIVRALGMGSCISEVGAGGSSPPLLPYSAESNLDGGKRRRLKGSSSFDFKVPGRMFLNGSSEVASMYCKQGKKGINQDAMLVWESFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKSRDGLSDHSSATGSYKSEGTGFRLVDEKISPTNHELDETDTILTLRESFLKACKIMDKELKLHPDVDCFCSGTTAVTLVKQGLDLVIGNVGDSRAVLGTRDHDDSLMAVQLTIDLKPNLPREEERIRLRRGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDVSYHRITEKDEFVVLATDGIWDVLSNEEVVDIVASTPRSTAARALVESAVRAWRTKFPFCKVDDCAVVCLFFDSNSDFKSTDTEDKLLWEASIDQSEQLSSLDEKGIGLENEKQLH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0226 455 Coils Coil 451 455 - -
Ssu3g0226 455 CDD PP2Cc 97 411 IPR001932 -
Ssu3g0226 455 Pfam Protein phosphatase 2C 203 390 IPR001932 -
Ssu3g0226 455 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 42 417 - -
Ssu3g0226 455 SMART PP2C_4 91 409 IPR001932 -
Ssu3g0226 455 SUPERFAMILY PP2C-like 94 413 IPR036457 -
Ssu3g0226 455 ProSiteProfiles PPM-type phosphatase domain profile. 97 411 IPR001932 -
Ssu3g0226 455 PANTHER ALPHABET, ISOFORM E-RELATED 42 417 - -
Ssu3g0226 455 Gene3D - 92 420 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0226 Ssu-Chr3 3951388 3956723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0226 84 415 PP2C-type Phosphatase Gene Family AT1G16220 60.882 8.05e-150 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0226 - - gmx:100802479 846.654