Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0218 atgccTAGTTTTCAGTTTCACTCGAGAGTTTTGAGTTTGCTGATTTCAGTTTCCTATTTGATGACTTGCTTGGGAAACAATGGCATGACTGTCCAGTTGAATGATGATGTTCTTGGCCTGATTGTGTTCAAATCAGACCTTCATGACCCTTCTTCTTATCTTGCTTCATGGAATGAAGATGATGTCAATCCATGTTCATGGCAGTTCGTGCAGTGCAATCCCGAGACTGGAAGAGTTTCTGAGGTCTCATTAGATGGCTTGGGATTATCTGGGAAGATTGGAAGAGGCCTTGAGAAGTTGCAACATCTAACGGTATTGTCCCTTTCTCGCAACAACTTGAGTGGGAGTATTAGTCCAGCTCTTACTCTTTCCAACAGTCTTGAGAGGCTGAACCTTAGTCACAATGCTCTTTCTGGTTCCATACCTACTTCTTTTGTGAATATGAATTCAACAAAATTTCTTGATCTTTCAGAGAATTCATTCTCAGGACCAATCCCTAAGAGTTTTTTTGAGAGCTGTTCTTCCCTTCATCACATTTCTCTAGCTAGGAACATGTTTGAAGGACCAGTTCCTGGCTCACTGTCTAGATGTTCCTCATTGAATAGCCTTAATCTTTCCAATAATCGTTTCTCTGGTAATGTGGACTTTAGTGGGATTTGGTTATTGAACAGGCTTAGGACTTTGGATCTATCCAACAATGCCTTATCAGGGTCTTTACCTAATGGAATTTCATCCATACATAACTTGAAAGAGATCTTATTAAAAGGTAACCAGTTTTCAGGTCCATTATCCACTGATATTGGATTCTGCCTGCATCTGAGTAGGTTGGATTTTAGTGATAATCAGTTCAGTGGAGAGTTACCTGAGTCACTTGGGAGGCTTAGTTCTTTGAGCTATTTCAAGGCATCAAATAATCTTTTCACCAGTGAATTCCCTCAATGGATTGGTAACATGACCAGTCTGGAATACCTTGAGCTCTCGAACAATCAGTTCACTGGAAGCATCCCACAGTCAATAGGGGAACTGAGATCACTGGCTCATCTGAGCATTTCAAATAACAAGCTTATTGGAACTATTCCATCATCACTAAGTTCCTGCACAAAGTTATCTGTGATCCAGCTCAGAGGCAATGGTTTCAATGGCACCATTCCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGACTTGTCCCAAAATGAATTGAAAGGCTCAATTCCAGCAGGTTCAAGCAGGCTCTTAGAAACTCTCACCAATTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCTGCAGAAACTGGTCTTCTTTCAAAACTAAGATATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATGCCTCCAGAATTTGGTCTCCTTCAGAACCTAACAGTGTTGGATCTTCGCAACAGTGCCTTGTATGGTTCAGTTCCAGCAGATATATGTGATTCAGGCAATTTAGCCGTTCTCCAACTAGATGGAAATTCATTGCAAGGGAACATTCCAGAAGAGATTGGGAATTGTAGCTCTCTTTACTTCCTgAGTTTGTCTCACAATAATTTGACTGGCTCAATTCCAAAGTCCAtgtcaaagctaaacaagctcAAAATCCTCAAACTGGAAGTCAATGAGCTAAGTGGGGAGATACCAATGGAGCTTGGAATGCTTCAAAGTCTTCTTGCTGTGAACATATCATACAACAGGCTCACAGGGAGGCTTCCTACAGGTAGCATATTTCAAAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTGTGCTCACCCTTGCTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCACTAGTGCTTGACCCAAATGCCTATAACAACCAAATAGGTCCCCAAAGGCAAAGAAGCGAATCATCTGTGTCCGGCCCAGTTCATCGCCACAGGTTCCTTAGTGTATCTGCTATTGTAGCAATATCTGCATCCTTTGTCATTGTATTAGGAGTGATTGCTGTTAGCCTACTTAATGTTTCTGTAAGGAGAAGGCTATCATTTGTGGATAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCAAGATCAGGAAGTCCAGCCACAGGAAAGCTTATTCTGTTTGATTCCCAGTCCTCACCTGATTGGATCAGCAATCCTGAGTCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACACTCTACAAGGTTCCACTGGGATCACAAGGAAGAATGGTAGCAATTAAGAAGCTTATATCCCCAAACATAATCCAATATCCAGAAGACTTTGATAGGGAAGTTAGAATCCTAGGGAAAGCAAGGCACCCAAACCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTTTTAGTAACTGAGTTTGCACCAAATGGTAGCTTGCAAGCCAAGCTACATGAAAGGCTGCCTTCAAGTCCTCCTCTTTCTTGGGCTATAaggtttaaaattttgcttGGAACAGCAAAGGGGCTTGCTCATTTGCACCATTCTTTCCGTCCACCAATCATCCACTACAACATAAAGCCAAGTAACATTTTGCTTGATGAAAATTACAACCCCAAGATCTCGGATTTTGGGTTGGCTCGGCTTCTGACAAAGCTGGACAGGCATGTGATGAGCAATAGGTTTCAGAGTGCATTAGGATATGTGGCACCAGAATTAGCATGCCAGAGCTTAAGGGTGAATGAGAAATGTGATGTGTATGGTTTTGGGGTGATGATCCTTGAGCTGGTGACAGGTAGGAGGCCAGTGGAGTATGGAGAAGACAATGTGCTGATATTGAATGACCATGTGAGGGTGTTGCTTGAGCAAGGCAATGTGTTGGACTGTGTGGATCAAAGCATGAGTGAGTACCCAGAGGATGAGGTATTGCCTGTTCTCAAGCTAGCAATGGTATGCACCTCTCAAATTCCCTCTAGCAGGCCTACTATGGCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACCCCAGTTCCTCAAAGAATGGAAGTGTTTTGA 3024 0.42 MPSFQFHSRVLSLLISVSYLMTCLGNNGMTVQLNDDVLGLIVFKSDLHDPSSYLASWNEDDVNPCSWQFVQCNPETGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSRNNLSGSISPALTLSNSLERLNLSHNALSGSIPTSFVNMNSTKFLDLSENSFSGPIPKSFFESCSSLHHISLARNMFEGPVPGSLSRCSSLNSLNLSNNRFSGNVDFSGIWLLNRLRTLDLSNNALSGSLPNGISSIHNLKEILLKGNQFSGPLSTDIGFCLHLSRLDFSDNQFSGELPESLGRLSSLSYFKASNNLFTSEFPQWIGNMTSLEYLELSNNQFTGSIPQSIGELRSLAHLSISNNKLIGTIPSSLSSCTKLSVIQLRGNGFNGTIPEGLFGLGLEEIDLSQNELKGSIPAGSSRLLETLTNLDLSDNHLQGNIPAETGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLTVLDLRNSALYGSVPADICDSGNLAVLQLDGNSLQGNIPEEIGNCSSLYFLSLSHNNLTGSIPKSMSKLNKLKILKLEVNELSGEIPMELGMLQSLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQIGPQRQRSESSVSGPVHRHRFLSVSAIVAISASFVIVLGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISNPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISPNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEFAPNGSLQAKLHERLPSSPPLSWAIRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENYNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLDCVDQSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0218 1007 CDD STKc_IRAK 726 994 - -
Ssu3g0218 1007 Gene3D Ribonuclease Inhibitor 150 217 IPR032675 -
Ssu3g0218 1007 Gene3D Ribonuclease Inhibitor 218 270 IPR032675 -
Ssu3g0218 1007 Gene3D Ribonuclease Inhibitor 37 149 IPR032675 -
Ssu3g0218 1007 Gene3D Ribonuclease Inhibitor 271 342 IPR032675 -
Ssu3g0218 1007 SUPERFAMILY Protein kinase-like (PK-like) 723 1001 IPR011009 -
Ssu3g0218 1007 Pfam Leucine Rich repeat 439 451 IPR001611 GO:0005515
Ssu3g0218 1007 Gene3D Ribonuclease Inhibitor 343 610 IPR032675 -
Ssu3g0218 1007 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Ssu3g0218 1007 Gene3D Transferase(Phosphotransferase) domain 1 802 1004 - -
Ssu3g0218 1007 ProSiteProfiles Leucine-rich repeat profile. 416 438 IPR001611 GO:0005515
Ssu3g0218 1007 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 1005 - -
Ssu3g0218 1007 Pfam Leucine Rich Repeat 224 244 IPR001611 GO:0005515
Ssu3g0218 1007 Gene3D Phosphorylase Kinase; domain 1 720 801 - -
Ssu3g0218 1007 PANTHER BNAA09G02190D PROTEIN 10 1005 - -
Ssu3g0218 1007 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Ssu3g0218 1007 SUPERFAMILY L domain-like 311 589 - -
Ssu3g0218 1007 ProSiteProfiles Protein kinase domain profile. 720 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0218 1007 Pfam Leucine rich repeat 303 355 IPR001611 GO:0005515
Ssu3g0218 1007 Pfam Leucine rich repeat 165 210 IPR001611 GO:0005515
Ssu3g0218 1007 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Ssu3g0218 1007 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0218 1007 PRINTS Leucine-rich repeat signature 225 238 - -
Ssu3g0218 1007 PRINTS Leucine-rich repeat signature 414 427 - -
Ssu3g0218 1007 SUPERFAMILY L domain-like 50 387 - -
Ssu3g0218 1007 SMART LRR_typ_2 100 125 IPR003591 -
Ssu3g0218 1007 SMART LRR_typ_2 462 486 IPR003591 -
Ssu3g0218 1007 SMART LRR_typ_2 438 461 IPR003591 -
Ssu3g0218 1007 SMART LRR_typ_2 318 341 IPR003591 -
Ssu3g0218 1007 SMART LRR_typ_2 342 366 IPR003591 -
Ssu3g0218 1007 SMART LRR_typ_2 222 246 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0218 Ssu-Chr3 3865419 3868527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0218 11 1004 Receptor kinase-like Gene Family AT3G28040 64.343 0.0 1264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Ssu3g0218 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0218 - - gmx:100813764 1853.57