Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0199 ATGGAGTCCAAACAACAGGCACCAAgtgttattttagaattgatGGGTCTTGATAAAGTGCCTACTCAACATCCTGTTATAGATAAACAGAAAGTGCTCTCTGAGAATTACCTGCAGAAAGTTTCCTCTATTGGTGTCAGAAAGAAGCGTTCATCTCATCAGCATCATTCCCTTGGAATGAATACTGATGAAAAGGAAGAATCTGAGGATGTTCTAAAAGTGGTCAAAGCACTAAGGCGAGGTAAGCACCATAACCCATCAAAGGGAAATGGGAAAGAGAACCCTAGTTCTTGCGAAAATTCTCATTTGGCTGATGGGCTCCTCCAAGAGATATTCTATCCTAAAAGCATGAAAGTATATCCTGAAatgagagatagaaagaaaataccCTATCACATGAATATTGGTAAGCGGAGTTCAAGGTCTTTCAGTAAAATTTCAGAGGAGATTTCTATGCAATCGGGAAATGTTGCAAATAGAGTTTTAGATACTGCTTCAAGTTCATTTTTCAGAAGGAATGAAGCATTTGCCAATGATATGCTGAAGCCTGCTTCAAATATTTCAGTTGATGAGATCCCATGCAATTCCCCCTTCTTCTGTTCTGATGGTTCATATGTAGGCTTTGAAGCCATGAACAAAACTTTGGAACAGAGGGATGTGACTGAAAATTTTCGAGAACTTGGACGGTGTGGTCAAGACTGTACACATAACCAGTTGCCTTTGATTTCTGAACATGGAAATGGAGCAAAAAATTTGACTCATCGAAGTGGTTATAGTAATGATAGAATTAAAAGGAACATTAGATGTAAGGTTGGTGTTAATTATAGCTTTGCTAGAAGAGTGCCAAGACCTCTTTGTGCAGCTTCAGTTATTGCTGATAATTGTGGAATTTTGAATCAGGATATCTTGTTTCGGAGGTATTGGGGTTTGACAAAGAATGCGTCTGCAAATTGGTCATCCTGGAAGTCaaagaatcaaaatattaacCAGAAAGAATGCTTGGAAGATGTGAACCTCATTCCCGGCCAAGAGAAATCCCCTTCTTTTTCCTCTTGTTTCAATAATAATCATACTGAAGATAATTGTATTGGTCATACGTCAGAGAAGAGATGTTATGGGAACAATTTGTCTGATAAGATAACCATACCTCCTCAATTGTCAAGTTCTAGTCCTTCTCCTGCCTTGCTAGACAATAAGATCTTGCAAGAGAGATGCTTAATGAATGATGAAGTGAAGAACAAAAAGTATGAAGACACTAATATGTCTAAGCAAAATGTCGTGTCTCCAGACTTATCAGTTGAATTCTTGGGATCTGATGCAACGACTGAGGTTGTTGTCAGGTCACATAATAATCCAACCAAGCATCAATCTAAATCAACAGCCTTCATTTTGTCACAAGAAATTGATTCTTTGAGTCATGCTTCATATGCTTCAAAGCAACagGATACATCAGACTTTCAAGAAGATTCTGTTCATTCACTTTGCTCTGAGGCTGACCCAGATTCCCTTGGTAGCTTCGAGGAGGTATATGAACCTAGTCCAATTTCAGTTTTGGATCACTTATTTGGAGAAGACATTCCTTTCAGCTCTAAATGTGGCGATCATGTATATGATTCCTCTGAAGTGGATGATGAAGAATTTGGTTTGAATGTTTCAAGCGATGAAGATTGTGGGAATGAATCTGTAGGTGACTctcaagaaaataaagatatagCAGGATTATTTAGAGCTGAAGAAAGTAGGGATTTCTCATATGTTGTTGAGGTCTTAACCGAGGCAGGTATATGTAATAGGAGCTTGTTTACAGACTTTTCTACATGGCACTCCGCAGAATGTCCTATTAGCCCTTCTGTTTTTGAAATTCTGGAAAAGAAATTTGGTGAGCAGCAACTTTGGAAGAGATCTGAAAGGAAACTTCTCTTTGATCGCATCAACTTAGGGCTGCTAGAAATTCTCCAGCCATATTTGTATATCCCAATGTGGGAAAAACCCATGTCAAGAAGGTTGAATGCTGAACCAAGCCAGGACATGATTGAGGAGGAGATGTGGGGGTTGCTTGTTGCACAGGAAAAGAAAGCTGGTAAAGAGTTAGCAGACAATATGCTTGGAGGGGAAATTAGGTGGATAGAACTAGTTGAAGATGTTGAAGATATTGTTAGAGAGATAGTTAAGTTGTTAATAGAGGAGCTTGCAAATGAGATAGTTAGCTTGgagaatttttga 2223 0.3752 MESKQQAPSVILELMGLDKVPTQHPVIDKQKVLSENYLQKVSSIGVRKKRSSHQHHSLGMNTDEKEESEDVLKVVKALRRGKHHNPSKGNGKENPSSCENSHLADGLLQEIFYPKSMKVYPEMRDRKKIPYHMNIGKRSSRSFSKISEEISMQSGNVANRVLDTASSSFFRRNEAFANDMLKPASNISVDEIPCNSPFFCSDGSYVGFEAMNKTLEQRDVTENFRELGRCGQDCTHNQLPLISEHGNGAKNLTHRSGYSNDRIKRNIRCKVGVNYSFARRVPRPLCAASVIADNCGILNQDILFRRYWGLTKNASANWSSWKSKNQNINQKECLEDVNLIPGQEKSPSFSSCFNNNHTEDNCIGHTSEKRCYGNNLSDKITIPPQLSSSSPSPALLDNKILQERCLMNDEVKNKKYEDTNMSKQNVVSPDLSVEFLGSDATTEVVVRSHNNPTKHQSKSTAFILSQEIDSLSHASYASKQQDTSDFQEDSVHSLCSEADPDSLGSFEEVYEPSPISVLDHLFGEDIPFSSKCGDHVYDSSEVDDEEFGLNVSSDEDCGNESVGDSQENKDIAGLFRAEESRDFSYVVEVLTEAGICNRSLFTDFSTWHSAECPISPSVFEILEKKFGEQQLWKRSERKLLFDRINLGLLEILQPYLYIPMWEKPMSRRLNAEPSQDMIEEEMWGLLVAQEKKAGKELADNMLGGEIRWIELVEDVEDIVREIVKLLIEELANEIVSLENF 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0199 740 MobiDBLite consensus disorder prediction 475 494 - -
Ssu3g0199 740 Pfam Domain of unknown function (DUF4378) 582 733 IPR025486 -
Ssu3g0199 740 MobiDBLite consensus disorder prediction 45 100 - -
Ssu3g0199 740 PANTHER AFADIN 86 740 - -
Ssu3g0199 740 PANTHER AFADIN 1 83 - -
Ssu3g0199 740 PANTHER DUF4378 DOMAIN PROTEIN 86 740 - -
Ssu3g0199 740 PANTHER DUF4378 DOMAIN PROTEIN 1 83 - -
Ssu3g0199 740 MobiDBLite consensus disorder prediction 56 76 - -
Ssu3g0199 740 MobiDBLite consensus disorder prediction 475 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0199 Ssu-Chr3 3635163 3639173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0199 471 737 TRM (TON1 Recruiting Motif) Superfamily AT2G39435 32.639 4.34e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0199 - - gmx:100796503 1180.24