Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0197 ATGGCTTCTTCACTGGGTCGAAGAAGAACCCACGCTCCCAAATCATCCTCCACCCTAAACGACGACGTCTGCTGCGAGGAATGTGGCTCGGGCCACTCCCCTGCGAAGTTGCTTCTCTGCGACAAATGCGACCGAGGCTACCACCTCTTCTGCCTCCGACCCATCCTTCCTTCTGTCCCCAGTGGGGATTGGTTCTGCCCTTTTTGCTCCAACCACAAGCCCAAGTCTTTCCCCCTTGTCCAGACCAAAATCATTGACTTCTTTCGAATTCAACGCTCCCCCATGACATTGTCAAATCAAGACACACGGAAGAAGCGAAAGCGGGGTGGCAGCTTGGTGGTGtcgaagaagagaaggaaactGTTGCCGTTCGCGCCAAGCGAGGATCCGAAGAGGAGGTTGGAGCAGATGGCGTCACTGGCAACGGCGTTGACTGCAACTAAAACGGAATTCAGCAATGAGCTTACTTACATGCCTGGAATGGCGCCAAGGTCCGCTAATTGCCCTGCTCTTGAGCGTGGTGGAATGCAGGTCTTGTCAAAAGAAGACACCGAGACCTTAAACCTGTGCAAAAGTATGATAGAGAGAGGAGAATGGCCGCCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACCGTAGAAGCAGATAGATCCATCAAAGATTTAACTATAATAACAGAATATGTTGGAGATGTAGACTTTTTGAAGAATAGGGAAAATGACAATGGAGATAGCATAATGACACTTCTCTCAGCTTCTGATCCTTCACAGATACTTGTCATCTGTCCAGACAAACGTAGCAACATAGCACGTTTCATTAACGGCATCAATAATCACACACCGGAAGGGAAAAAGAAGCAGAACTTAAAATGTGTGAGGTTTGACGTTGGAGGTGAATGTCGGGTTCTTCTAATTGCCAATAGAGATATTACAAAGGGGGAAAGGTTGTACTATGATTACAATGGAGACGAACACGAATATCCAACTGAACATTTTGTTTGA 1005 0.4667 MASSLGRRRTHAPKSSSTLNDDVCCEECGSGHSPAKLLLCDKCDRGYHLFCLRPILPSVPSGDWFCPFCSNHKPKSFPLVQTKIIDFFRIQRSPMTLSNQDTRKKRKRGGSLVVSKKRRKLLPFAPSEDPKRRLEQMASLATALTATKTEFSNELTYMPGMAPRSANCPALERGGMQVLSKEDTETLNLCKSMIERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDNGDSIMTLLSASDPSQILVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0197 334 CDD SET_ATXR5_6-like 197 334 - -
Ssu3g0197 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Ssu3g0197 334 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 331 - -
Ssu3g0197 334 PANTHER HISTONE ACETYLTRANSFERASE 7 331 - -
Ssu3g0197 334 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g0197 334 Gene3D SET domain 106 334 IPR046341 -
Ssu3g0197 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Ssu3g0197 334 CDD PHD_RSF1 25 69 - -
Ssu3g0197 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 85 IPR013083 -
Ssu3g0197 334 SMART PHD_3 24 70 IPR001965 -
Ssu3g0197 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Ssu3g0197 334 SUPERFAMILY FYVE/PHD zinc finger 15 76 IPR011011 -
Ssu3g0197 334 SUPERFAMILY SET domain 192 325 IPR046341 -
Ssu3g0197 334 Pfam PHD-finger 25 71 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0197 Ssu-Chr3 3582855 3585252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0197 12 85 C2H2 Transcription Factor Family AT3G01460 33.766 2.43e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g0197 PHD 5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0197 K24406 - gmx:100775247 634.409