Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0192 ATGGTGGGCAACGACGACGCGTGCCACCTCTCGGCCTCCCGGAAACTGTTCTGGCGGTCGGCGTCGTGGTCCTCCTCCCGCACCGCCGCCGGAAACGCCCCTTCCGTCGAGGCAGACAAGGGTTTCCCCGATTCCGGCGTCGCCGACGGTGCCCACGGCCAGAATCGGCGGTTCCCTCCGCCGCCGCTGACCCCTCGGTCGCAGCAGAATTGCAAGGCGCGGTCGAGCCTGCCGCCGCTGCAGCCGCTCTCCATAGCCCGCCGGAGCCTCGACGAGTGGCCGAAGGCGAGCTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCCGGCGGGAGAGGTAATGGTAGCAACGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAACCCTGATCATAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGATAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATCGGATCACTCATGTGTTGAACTGTGTTGGGTTTGTGTGTCCTGAGTACTTTAAAGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCTGAGGACATTACTAGTATTTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAGCAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTAGGTCTACCTCTTTGGTCATTGCTTACCTTATGTGGAGGGAGGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGGGGAATTGCGGATCCGAATATGGGATTTGCTTGCCAGTTGTTGCAGTGCCAGAAAAGGGTCCATGCCTTCCCTCTTAGCCCTAGCTCTTTGCTGAGGATGTATAGAATTGCTCCACACTCGCCGTATGATCCCTTGCATCTTGTCCCCAAAATGTTGACGGATCCTTCGTTGGCTGCGTTGGACTCCAGAGGTGCATTTATCGTGCACATTCCTTCGGTGATATGTGTTTGGATTGGTAAGAATTGTGAGCCCATCATGGAAAGGGATGCCAGAGGGGCTGTGGGCCAGATTGTCCGGTATGAGAAGGTGCAAGGACCTATTGTGATGATTAAGGAAGGTGATGAACCGGCGTACTTCTGGGATGCTTTTTCAAATTTCCTGCCCTTGATGGACAAATCTGGCAATAGAGTAGAAGATGGTAAATTAACTGGTAAAGTTTTGCCTGGTGAGAGGAGAGTGGAGGCATACGATGTTGATTTTGAGGTGTTCAAAAAAGCAATCACGGGAGGCTTTGTGCCGCCATTTGCGTCATCGGAGGATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGTTTTAAGGCGTAAAGTTTCCTCTGCTAATATGAAGGAGTTTGTCTCGGCCCCTAGGTTATCCTTTCCAAGGGTATATTCAGATTCCATGTTGTGTATTCATACATCAGTAAATTCGTCTCCATCCGCATCCCTGTCATCATCGTCATCGTCTTTATCATCAACCTCTTCACCTTCTTATGTCTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCAAAGTTTTTGTCAGAATTGTCACCGGATTCTTCCTCTATGGTTTTGACTTGTATTCCTCCTGTATCTTCATCTTTgtctaatttttctaatttgtcGATCTCATCAAATTCTACTTCTCAAACAGTGTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCTCATCCTCGTTCTCAGTCAGCCTCTTTACCATTGAAAAAATCATCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCGCTAATGAATGATAAGACACAAGTAATAGATAAATCGTCAACTTTTCATGCTAGTCGAGAAGATGGCATTTTTGTTAATGGCAATGTTAGTTATTTGCAACAATCAGATAGTAAAGGttatttttgtgagtctaaCAACCATGCCAAGGGTGGAGGTATGAATTCAATTCAAAAGTGTAAGCTGGCATTATGTCCAAGCATCGTTGATAGCATGCACCTCAAAGAATCATCACTTGTCAGGAACTGTGTTGAGCCTTTGATAGATAGTTCCTCGAGTGAAGGCTTATTGCTTAGTCAGTCTACAGCATTGAAGGGAACTAAGGAGAGTAATAAGAGTGGCTTACTGCAGTATAATGTCACACAAACTTCGGTATATCACTGGCCCAGTTTAGAAAAGATTGAGACATTTGGTACAAGTCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCAAATATGCATGTACGTGCAGggaacattttatatatttgggtAGGGAGGTCTGTCAATTGTGACATCAATTGTGCCGCTTCACAGGTTCACTTAGATAGTGATAAACAGTCAGATTATCTAGGAGCTGTTGACTGGAATCGTATTGGTTGTGATCTCCTTGCTCGGTTTAACTTGCCAAAGAATTCAGTCATCAAGATTGTTAAAGAGTATGAAGAACCTCCAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2595 0.4559 MVGNDDACHLSASRKLFWRSASWSSSRTAAGNAPSVEADKGFPDSGVADGAHGQNRRFPPPPLTPRSQQNCKARSSLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHNPDHRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNRITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSLAALDSRGAFIVHIPSVICVWIGKNCEPIMERDARGAVGQIVRYEKVQGPIVMIKEGDEPAYFWDAFSNFLPLMDKSGNRVEDGKLTGKVLPGERRVEAYDVDFEVFKKAITGGFVPPFASSEDEHETHLPARESSWSVLRRKVSSANMKEFVSAPRLSFPRVYSDSMLCIHTSVNSSPSASLSSSSSSLSSTSSPSYVSPDSISSDSSTHSKFLSELSPDSSSMVLTCIPPVSSSLSNFSNLSISSNSTSQTVSNSTDILGVKLSHPRSQSASLPLKKSSTSLAERRGSLSKSLKLPLMNDKTQVIDKSSTFHASREDGIFVNGNVSYLQQSDSKGYFCESNNHAKGGGMNSIQKCKLALCPSIVDSMHLKESSLVRNCVEPLIDSSSSEGLLLSQSTALKGTKESNKSGLLQYNVTQTSVYHWPSLEKIETFGTSHLDSKAAFVIFSPNMHVRAGNILYIWVGRSVNCDINCAASQVHLDSDKQSDYLGAVDWNRIGCDLLARFNLPKNSVIKIVKEYEEPPEFLALLSSL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0192 864 MobiDBLite consensus disorder prediction 513 543 - -
Ssu3g0192 864 MobiDBLite consensus disorder prediction 20 122 - -
Ssu3g0192 864 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 214 275 IPR000387 GO:0016311|GO:0016791
Ssu3g0192 864 PANTHER MKPA PROTEIN 1 858 - -
Ssu3g0192 864 SMART dsp_5 155 294 IPR020422 GO:0006470|GO:0008138
Ssu3g0192 864 Gene3D Severin 306 402 IPR029006 -
Ssu3g0192 864 SUPERFAMILY Actin depolymerizing proteins 304 409 - -
Ssu3g0192 864 Pfam Dual specificity phosphatase, catalytic domain 163 293 IPR000340 GO:0008138|GO:0016311
Ssu3g0192 864 CDD DSP 156 290 - -
Ssu3g0192 864 Gene3D Protein tyrosine phosphatase superfamily 136 297 IPR029021 -
Ssu3g0192 864 ProSitePatterns Tyrosine specific protein phosphatases active site. 239 249 IPR016130 GO:0016311|GO:0016791
Ssu3g0192 864 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 149 296 IPR029021 -
Ssu3g0192 864 ProSiteProfiles Dual specificity protein phosphatase domain profile. 155 297 IPR020422 GO:0006470|GO:0008138
Ssu3g0192 864 SUPERFAMILY Actin depolymerizing proteins 759 862 - -
Ssu3g0192 864 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0192 Ssu-Chr3 3484786 3488997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0192 2 191 Protein tyrosine phosphatase (PTP) family AT3G55270 60.000 1.02e-61 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0192 - - gmx:100790177 1312.36