Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0190 ATGGCTCCTACTAAGGTGGACAATACTAAAAAGGCTGATCCCAAAGCTCAGGCTTTGAAGACATCTAAGGCTGTGAAATCAGGTGGCCAAGTGTTTAAGAAGAAAGCTAAGAAGATCAGGACATCAGTTACTTTTCACAGGCCAAAGACATTGAAGAAGGAAAGGAACCCTAAGTATCCCCGTATTAGTGCACCACCAAGAAACAAGTTGGACCATTATCAGATTCTTAAATTTCCTCTAACTACTGAGTCTGCAATGAAGAAAATTGAGGATAACAACACACTGGTTTTTATTGTTGATATCCGTGCTGACAAAAAGAAGATTAAAGATGCCGTGAAGAAGATGTATGACATTCAGGCCAAGAAAGTGAATACTTTAATCAGGCCGGATGGAACGAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCATTGGATGTAGCCAACAAGATTGGTATCATCTAA 468 0.3974 MAPTKVDNTKKADPKAQALKTSKAVKSGGQVFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0190 155 TIGRFAM uL23_arch: ribosomal protein uL23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Ssu3g0190 155 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 155 - -
Ssu3g0190 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 -
Ssu3g0190 155 MobiDBLite consensus disorder prediction 47 66 - -
Ssu3g0190 155 Pfam Ribosomal protein L23, N-terminal domain 15 65 IPR005633 -
Ssu3g0190 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu3g0190 155 Gene3D - 36 155 IPR012677 -
Ssu3g0190 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Ssu3g0190 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 72 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ssu3g0190 155 MobiDBLite consensus disorder prediction 1 39 - -
Ssu3g0190 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0190 Ssu-Chr3 3474726 3476207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0190 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.387 4.03e-70 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0190 K02893 - gmx:100777933 295.049