Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0188 atgaTGATATCGAGAGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAACCTCTCACGCCGGTGTCGGAGGTTTCGGAGCCGCCGGAGTCGCCGTCGCCGTACCTGGACCCCGGCGCCGAGACCTCGGCGTCACAGCAGGTGGAGGCGGAGGAGGAGATGGAGGAGGCGGAGGAGATCGAGCCGCCGCCGGCCGCGGTTCCGTTTTCTCAGCTCTTCGCATGCGCCGACCGCTTCGATTGGTTCCTCATGGCCGCCGGTTCCATCGCCGCCGCGGCTCACGGCACCGCTCTCGTCGTTTACTTGCACTACTTCGCGAAGATAATCCACGTGCTGCGGATGGATCCTCAGCAGGGCCCGTCGCAGGAACAGTTTCACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACGGGAGAACGGCAGACTGCTGTCATCAGGTCAAAATATGTTCAAGTACTACTTAATCAAGATATGAGTTTTTTTGATACTTATGGGGATAATGGAGACATTGTGAGTCAAGTATTAAGTGATGTGCTGCTTATCCAGTCTGCCCTTAGTGAAAAAGTTggaaattatattcataatatgGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCCACAGGTCCATTTATTGTTGCCGCTGGAGGAGTATCAAATATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAAcagGCAGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACTTTGGCCAAGTATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATTAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGTTCTTGCGCATTACAACTTTGGGTTGGAAGATTCTTGGTTATTCACGGAAAAGCGCATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGACTATTTGAGATGATAAGTCGATCATCCTCATCTGTTAATCATGATGGCACTGCCCCTGATTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATATTGAGTGGATTTTATCTCACTGTGCCTGCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGCGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACGCAGGAGCCTGCTTTGCTTAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGCCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTAGAGAATGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGAGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGAcgctcaacaataataattgctCGGAGGCTTAGTCTCATAAGGAATGCTGACTATATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGCACTCATGATGAATTATTAAGCCTGGATGGCTTATATGCGGAGCTTCTTCGATGCGAAGAGGCAGcaaaacttcccaagagGATGCCTGTTCGAAACTACAAGGAAACTGCAGCCTTCCAAATTGAGAAGGATTCTTCAAGTCATAGCTTCAAAGAACCATCATCTCCTAAATTGATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCTCGACCTCCAGATGGTGTCTTCAACTTGCAAGAATCACCAAATGTCCAGAGCCCACCACCTGAGAAGATGCTGGAAAATGGTCAGGCGTTGGATGCAGTAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATGTTCAATCTGTGCATCGACAAATGTCAAATGATTCTGATCCAGAATCCCCTGTTTCGCCTCTTTTAACCTCTGATCCTAAAAATGAACGCTCTCATTCACAGACTTTTAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTAAAATGAGAGAAACAAAGGGTGCACAGCATCGAAAACCACCATCCCTGCAGAAGCTGGCTGAGCTTAGTTTTGCCGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGAGCTGCAATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGATGATCATCACCTAGGACAGGAGGTAGACAAGTGGTGCTTGATCATTGGCTGCATGGGTATTGTGACAGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTGGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTCATTGGTGCTTTGCTGCACTGGCGGTTAGCACTCGTGGCTTTTGCAACCCTTCCAATTCTCTGTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCTGGATTTTCGAGGGGCATCCAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAACATTTACACTGTTGTTGCTTTTTGTGCTGGTAATAAGGTAATGGAGCTCTATAAGCtgcaattaaagaaaatatttaagcaGAGCTTTTTTCATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTGCTACTTTGGTACACTGCGATATGCATAAAACGTGGTTACATGGATCCACCTACTGCACTCAAGGAGTACATGGTTTTTTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCCCCTTACATACTTAAACGACGAAAATCTCTCATATCGGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGTGCAGCATTGAAGCCACCCAGTGCATATGGAAGCATCGagttaaaaaatgttgatttttgttatCCAACTCGTCCTGAAATGTTGGTATTGAGCAATTTTAGCCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCTGGTTCAGGAAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCTGGCCAAGTTTTCCTTGATGGGAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCCACTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCTAGTTCATCAATTGAATCTGACTCAAGCCGAGTGGTGCAAGAGgctctagacacactaataatGGGAAACAAGACCACTATTTTAATAGCGCATAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTCCTTAATGGAGGACGGATAGTGGAGGAGGGCACTCATGATTCACTGGTGGCAAAGAATGGTCTGTATGTCCGACTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4209 0.4277 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVEAEEEMEEAEEIEPPPAAVPFSQLFACADRFDWFLMAAGSIAAAAHGTALVVYLHYFAKIIHVLRMDPQQGPSQEQFHRFTELALTIVYIAVGVFVAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGDNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGVSNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLENGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLSLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSSHSFKEPSSPKLMKSPSLQRISNVSRPPDGVFNLQESPNVQSPPPEKMLENGQALDAVDKEPSIRRQDSFEMRLPELPKIDVQSVHRQMSNDSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDVSVKMRETKGAQHRKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDDHHLGQEVDKWCLIIGCMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYKLQLKKIFKQSFFHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSAALKPPSAYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESDSSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0188 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1153 1390 IPR003439 GO:0005524
Ssu3g0188 1402 MobiDBLite consensus disorder prediction 754 781 - -
Ssu3g0188 1402 CDD ABC_6TM_Pgp_ABCB1_D1_like 93 382 - -
Ssu3g0188 1402 Pfam ABC transporter transmembrane region 835 1099 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g0188 1402 Pfam ABC transporter transmembrane region 87 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g0188 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1389 IPR027417 -
Ssu3g0188 1402 MobiDBLite consensus disorder prediction 782 810 - -
Ssu3g0188 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 830 1122 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g0188 1402 Pfam ABC transporter 1171 1319 IPR003439 GO:0005524
Ssu3g0188 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Ssu3g0188 1402 Gene3D ABC transporter type 1, transmembrane domain 70 659 IPR036640 GO:0005524|GO:0016021
Ssu3g0188 1402 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1398 - -
Ssu3g0188 1402 CDD ABC_6TM_Pgp_ABCB1_D2_like 825 1136 - -
Ssu3g0188 1402 MobiDBLite consensus disorder prediction 13 54 - -
Ssu3g0188 1402 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Ssu3g0188 1402 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016021
Ssu3g0188 1402 SUPERFAMILY ABC transporter transmembrane region 817 1138 IPR036640 GO:0005524|GO:0016021
Ssu3g0188 1402 Gene3D - 1151 1390 IPR027417 -
Ssu3g0188 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g0188 1402 MobiDBLite consensus disorder prediction 666 813 - -
Ssu3g0188 1402 Coils Coil 39 59 - -
Ssu3g0188 1402 MobiDBLite consensus disorder prediction 729 745 - -
Ssu3g0188 1402 Gene3D ABC transporter type 1, transmembrane domain 1004 1150 IPR036640 GO:0005524|GO:0016021
Ssu3g0188 1402 Gene3D ABC transporter type 1, transmembrane domain 769 997 IPR036640 GO:0005524|GO:0016021
Ssu3g0188 1402 Gene3D - 397 644 IPR027417 -
Ssu3g0188 1402 Coils Coil 253 273 - -
Ssu3g0188 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Ssu3g0188 1402 CDD ABC_MTABC3_MDL1_MDL2 1153 1389 - -
Ssu3g0188 1402 MobiDBLite consensus disorder prediction 675 716 - -
Ssu3g0188 1402 PANTHER ABC TRANSPORTER B FAMILY 19 1398 - -
Ssu3g0188 1402 SMART AAA_5 1180 1367 IPR003593 -
Ssu3g0188 1402 SMART AAA_5 434 613 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0188 Ssu-Chr3 3443969 3454063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0188 59 698 Calmodulin-binding Proteins AT2G36910 43.538 5.19e-165 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0188 K05658 - gmx:100789116 2564.64