Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0187 ATGTATAGAATTGCAGTTGGGTCCCCTGGAGAGGCTGGCCAACCTGATGCAATTAGAGCAGCATTTGCAGAATTCTTCTCCAtgatcatttttgtttttgctggGGAAGGATCTGTTATGGCTTACAACAAACTTACCAACAATGGACCTGCAACACCAGGTGGTCTCATAGCTGCATCGCTATCTCATGCATTCGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACATTTCTGGTGGTCACGTGAACCCTGCCGTCACATTTGGTGCCTTCATAGGAGGAAACATAACCCTGTTGAGAAGTATTTTGTATTGGATTGCACAGTTGCTTGGTTCAGTTGTTGCATGCATTCTTCTCAAGTCTGCAACCGGGGgaatgGAAACATCAGGCTTTTCTCTATCCCCTGGTGTGTCTGTCTGGAATGCATTGGCTTTTGAAATTGTGATGACTTTTGGCTTGGTATATACAGTTTATGCCACAGCAGTAGACCCAAAGAAAGGGAATGTGGGGATTGTTGCCCCAATTGCAATTGGTTTTATTGTGGGTGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCCATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACCTGGTCATGGACTCATCACTGGGTCTATTGGGTTGGTCCATTCATTGGTGCAGCAATTGCTGCAATTATCTATGATAATATCTTTATTGGTGATGATGGTCATGAACCTCTTTCAGGCAGTGActtctag 753 0.4356 MYRIAVGSPGEAGQPDAIRAAFAEFFSMIIFVFAGEGSVMAYNKLTNNGPATPGGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSGFSLSPGVSVWNALAFEIVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSGSDF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0187 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 Gene3D Glycerol uptake facilitator protein. 3 250 IPR023271 -
Ssu3g0187 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 2 250 - -
Ssu3g0187 250 SUPERFAMILY Aquaporin-like 15 238 IPR023271 -
Ssu3g0187 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Ssu3g0187 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g0187 250 PANTHER AQUAPORIN-8 2 250 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0187 Ssu-Chr3 3437350 3439136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0187 3 250 Major Intrinsic Protein MIP AT4G01470 83.468 2.50e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0187 K09873 - gmx:100788583 469.544