Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0181 atgaagagagaaagagaggttGATAGCTTAACCATGGCGAATTGTTTGATGTTGCTTTCTCGTGGAGGTGAATTTGAGGCCACCTACTCAAGCTCTTCTATGAACAACCGTGTCTTTGAGTGCAAGACATGTAACAGGCAGTTCCCTTCATTTCAGGCACTTGGTGGCCACAGGGCTAGTCACAAGAAGCCTAGGTTGATGGCAGGGGATATGGATGGCCAATTGCTTCATGATTCACCCCCAAAGCCTAAGACCCATGAGTGCTCCATTTGTGGGTTGGAGTTTGCTATAGGGCAAGCCTTGGGAGGCCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACGCGCACAATTCTACAACTATAAGTAGTAGTAGTGGTGGTAGCAGTTTTGATTCTTCACCAAAGAAGAAAGCTAGCAACAAGAGAGTCTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTAGAGTTTTTGAAGATTGGAAACCCAACTACTTTTGTTGATTATTTGCATTAA 528 0.4223 MKREREVDSLTMANCLMLLSRGGEFEATYSSSSMNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGDMDGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNAHNSTTISSSSGGSSFDSSPKKKASNKRVLVLDLNLTPFENDLEFLKIGNPTTFVDYLH 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0181 175 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Ssu3g0181 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Ssu3g0181 175 SMART c2h2final6 39 61 IPR013087 -
Ssu3g0181 175 SMART c2h2final6 86 108 IPR013087 -
Ssu3g0181 175 Pfam C2H2-type zinc finger 38 64 - -
Ssu3g0181 175 Pfam C2H2-type zinc finger 86 110 - -
Ssu3g0181 175 PANTHER ZINC FINGER PROTEIN ZAT5 11 161 - -
Ssu3g0181 175 MobiDBLite consensus disorder prediction 115 138 - -
Ssu3g0181 175 Gene3D Classic Zinc Finger 37 108 - -
Ssu3g0181 175 SUPERFAMILY beta-beta-alpha zinc fingers 37 108 IPR036236 -
Ssu3g0181 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Ssu3g0181 175 PANTHER ZINC FINGER PROTEIN ZAT12 11 161 - -
Ssu3g0181 175 MobiDBLite consensus disorder prediction 115 136 - -
Ssu3g0181 175 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0181 Ssu-Chr3 3303984 3304511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0181 1 162 C2H2 Transcription Factor Family AT2G37430 45.087 3.84e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g0181 zf-C2H2_6 8.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0181 - - gmx:100781134 331.257