Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0180 ATGTCTTTTCAGCATAAAGGCTTTTGGATGCCACGGGATGCTGGCTGCTTGGCtgaagaaaatgtgggatatgAGAATTCTTCCAGAATTGAACCCAAGCGTAGTCATCAGTGGTTTATGGATACAGGTGAACCAGAAATATTCAGCAACAAGAAACAAGCAGTTGAAGCTGTTAGTGGCAGGCCAGTTTCTGGAGTTTCACATGTGAATGTTTCCCAATGGGACACCAATTCTGGATTTCACTCAGTCACAGGTCAATTTTCTGACCGTCTTTTTGGATCTGATCTTGCTAGGAATGTGAATTTGGTTGATAAGAACGTGCCATCAATTGTAAGTGGAAATCTGAACATGGGAAGGAAGGATTTTGAGAATCAATATGGTAATAATCCATCCGTGGGATTGTCAATATCTCATTCCATAGCAGACCCTTCATCATGTCTCAATTTTGGTGGCATCAGAAAAGTTAAAGTTAATCAAGTCAGAGATTCTGACAACTGTATGCCTGCTGCATCCATGGGACACTCCTATAGTAGGGAAGATAACAGTACAATTTCAGTAGGTGCTGGCTACAATAAGAATAATGGCAATATTTCGTTGGGTCCTACTTATAACAATGGAAATGACAATACCATTGCTATGGGGACCAGAATAAGTAAGACTGATGACAACCTTCTCTCAATGGCTCACACCTTCAATAAAGGGGATGGGGGTTTTATGTTGATGGGCCACAATTATGGCAAGGGTGATGAAAGTATCTTATCAATGGGTCAGCCCTTTGACAAGGGAGATGGAAATTTCATATCAATGGGTCAATCATATGAAAAGGAAGATAGCAATTTAATATCTCTGGGTACTTCATATAACAAGGGGCATGAGAGCTTTATATCAATGGGTCCAACCTATGGTAAATCAGGAGAAGATTTCATAACCGTTGCTCCTTATGACAAGGGAACCGATCATATAATATCAATGGGTCCAACATATGATAAGGTGGATTCAAATATTGCATCAACAGTTCCATCATATGACAGAGGAGATTCTAGTTCTTTACCTGTGGGTCAAAACCACCACAAGGGTCCGAGCAGTACCATATCTTTTGGAGGTTTTCATGATGATCCTGAACCAAATCCCTCTGGTGGAATCATTAGTGGCTATGATCTGTTGATGGGAAGCCAGAACTCAGCTCAAGGATTGGATAGCCAGAATGATCTGACTGAGTCAAACTCTGAATCACTTGTAAACAGCATTCCAAAACCCAATACTAAAAATGATATTGTCTTTAAGAACAAAGAGCCAAAGACAACCAAGAAGGCTCCTCCTAACAACTTCCCTTCAAATGTCAAAAGTTTGCTGTCAACTGGTATTTTTGATGGTGTTCAGGTGAAATATGTTTCATGGTCACGGGAGAAAAGTCTTAAAGGAATCATAAAAGGAACTGGGTATTTGTGTTCATGTGATGACTGCAAGCAGTCAAAGgCTCTTAATGCATATGAGTTTGAGCGTCATGCTGGTGCCAAGACAAAACACCCTAACAATCATATATACTTTGAGAATGGAAAAACCATCTATGCTGTTGTTCAAGAGCTGAAAAACACTCCTCAGGAGATGCTTTTCGATGCAATTCAAAATGTGACTGGCTCCACCATCAACCAAAAGAACTTTCGCATATGGAAAGCATCATACCAAGCTGCTACACGGGAGCTTCAGCGTATCTATGGAAAGGATGAAGTGATCATTCCATCTTGA 1746 0.4003 MSFQHKGFWMPRDAGCLAEENVGYENSSRIEPKRSHQWFMDTGEPEIFSNKKQAVEAVSGRPVSGVSHVNVSQWDTNSGFHSVTGQFSDRLFGSDLARNVNLVDKNVPSIVSGNLNMGRKDFENQYGNNPSVGLSISHSIADPSSCLNFGGIRKVKVNQVRDSDNCMPAASMGHSYSREDNSTISVGAGYNKNNGNISLGPTYNNGNDNTIAMGTRISKTDDNLLSMAHTFNKGDGGFMLMGHNYGKGDESILSMGQPFDKGDGNFISMGQSYEKEDSNLISLGTSYNKGHESFISMGPTYGKSGEDFITVAPYDKGTDHIISMGPTYDKVDSNIASTVPSYDRGDSSSLPVGQNHHKGPSSTISFGGFHDDPEPNPSGGIISGYDLLMGSQNSAQGLDSQNDLTESNSESLVNSIPKPNTKNDIVFKNKEPKTTKKAPPNNFPSNVKSLLSTGIFDGVQVKYVSWSREKSLKGIIKGTGYLCSCDDCKQSKALNAYEFERHAGAKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSTINQKNFRIWKASYQAATRELQRIYGKDEVIIPS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0180 581 Pfam Tify domain binding domain 474 529 IPR032308 -
Ssu3g0180 581 PANTHER AUTOIMMUNE REGULATOR 1 581 - -
Ssu3g0180 581 MobiDBLite consensus disorder prediction 387 422 - -
Ssu3g0180 581 MobiDBLite consensus disorder prediction 339 444 - -
Ssu3g0180 581 PANTHER N-LYSINE METHYLTRANSFERASE 1 581 - -
Ssu3g0180 581 MobiDBLite consensus disorder prediction 339 362 - -
Ssu3g0180 581 SUPERFAMILY Porins 176 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0180 Ssu-Chr3 3244441 3251200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0180 433 562 PHD Transcription Factor Family AT3G53680 55.385 8.46e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0180 - - gmx:100782217 1115.14