Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0175 ATGGCGGCAAATGATAGCACACCGGCCATAGGAATCGATCTAGGCACGACATACACGTGCGTTGCAGTGTGGCGACACGACCGTGTGGAGATCATCGTGAACGACCAAGGGAACAGAACAACACCCTCTTATGTTGCCTTCAATCACACAGAAAGGATGATTGGTGACGCTGCTAAGAATCAAGCTGCTACCGACCCAACCAACACGgtctttggtaaaaaaaaaaagagcctaTTTAACTTGCTTACATACGCTGTGCTGATAGTCTTTCCGCTTGTTGCAATTGAATATATATGGTTATTTGCTCAGTACATGTCGTTAATTTCttcattcataaatatatactattattgcCTTAATTTCTGA 366 0.388 MAANDSTPAIGIDLGTTYTCVAVWRHDRVEIIVNDQGNRTTPSYVAFNHTERMIGDAAKNQAATDPTNTVFGKKKKSLFNLLTYAVLIVFPLVAIEYIWLFAQYMSLISSFINIYYYCLNF 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0175 121 SUPERFAMILY Actin-like ATPase domain 8 88 IPR043129 -
Ssu3g0175 121 PRINTS 70kDa heat shock protein signature 36 48 - -
Ssu3g0175 121 PRINTS 70kDa heat shock protein signature 58 66 - -
Ssu3g0175 121 PRINTS 70kDa heat shock protein signature 8 21 - -
Ssu3g0175 121 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 75 - -
Ssu3g0175 121 Pfam Hsp70 protein 9 75 IPR013126 GO:0005524|GO:0140662
Ssu3g0175 121 Gene3D - 1 90 - -
Ssu3g0175 121 PANTHER HEAT SHOCK PROTEIN 70KDA 1 75 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0175 Ssu-Chr3 3171750 3172115 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0175 1 75 Calmodulin-binding Proteins AT3G12580 74.667 6.09e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0175 K03283 - gmx:100783822 132.109