Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0174 atggacATTAGTGGAAACCCAAGAGCCCTTAGGAAGTTGAGGACTGCATGTGAGAAAGCAAAGAGAATACTCTCATGCACTACAATGACCACCATTGAGGCAGACTCTTTGTATGAGGGTATTGATTTCTACTCACCAATTAGTCGCGCAAAGTTTGAGGAACTCAACAAGGACTACTTTGACAAGTGTATGGAGTTTGTGGAGAAGTGTCTAATGGATGCTAAGATGGACAAGAGTAGTGTTCATGATGTTGTCCTTGCAGGTGGATCTACAAGGATTCCCAAAGTGCAAAAACTATTAAGTGACTTCTTTGATGGGAAGAGCCTCTGCAAAAGCATCAATGCTGACGAGGCTGTTGCATATGGTGCTGCTGTCCATGCTTCTGTGTTGAGTGGAGAGTTCAGTGAGAAGGTTCAAAACACTTTACTGAGGGAAGTCACTCCTCTATCTCTTGGGTTGGAGACAGATGGAGGTATCATGAAAATAATCATTCCTAGGAATACTGTCATTCCTACAAAGATGGAAGATGTGTTCACTACACATTTAgataaccaaatcaatatcTTGATTCATGTTTACGAGGGTGAGAGGCAAACAACTAGAGACAACAACTTGTTAGGTAAATTTGTGTTGGAAATTCCTCCAGCTCCGCGGGGTGTTCCTCAAATAAGCGTTTGCTTTGAACTTGATGATGAGGGCATCTTACATGTCTCTGCTAAGGAAAAATCCAAGGAAATAAACAGGAAGGTGACCATAATAAATGACAAAGGAAGGCTTTCAAAGGAAGAAATAGAGAGGATGATCTCAGAAGCTGAGAAGTACAAAGCCAAAGATGAGACGTATAGGAAGAAGGTAGAAGCAAGGCATGCATTGGAGAGGCATGCATACAACATGAGAAATGCTATAAACAGCGAGGCGATTAGTTTGAAGCTTTCTCTAGGAGACAAGGAAAAGATCAATGATGCAATTGATTGTGCCTTACAATGGCTTGAGGTCAGTGTGGATGCAGAAAAAGAACATTTTGACAACATGCGGCGCTATATTTCTAGCATTTTTGATCCAATTATTGTGAAGATGATAAAGGGGGAGGATAATGGTGTGCCTCCAGGTGCTGTTGGTAGCTCTGGTAGTAGTAATGGAAAGAAGCGCTTATTATCAATATTGGCAAATTTCGCTCTCCAGGCAGTATATTCAACTGTAACAGGTAATATCGTTGGGTTTGTTTCTGTTGTTATTGACAGCTTgtcaaattaa 1254 0.4027 MDISGNPRALRKLRTACEKAKRILSCTTMTTIEADSLYEGIDFYSPISRAKFEELNKDYFDKCMEFVEKCLMDAKMDKSSVHDVVLAGGSTRIPKVQKLLSDFFDGKSLCKSINADEAVAYGAAVHASVLSGEFSEKVQNTLLREVTPLSLGLETDGGIMKIIIPRNTVIPTKMEDVFTTHLDNQINILIHVYEGERQTTRDNNLLGKFVLEIPPAPRGVPQISVCFELDDEGILHVSAKEKSKEINRKVTIINDKGRLSKEEIERMISEAEKYKAKDETYRKKVEARHALERHAYNMRNAINSEAISLKLSLGDKEKINDAIDCALQWLEVSVDAEKEHFDNMRRYISSIFDPIIVKMIKGEDNGVPPGAVGSSGSSNGKKRLLSILANFALQAVYSTVTGNIVGFVSVVIDSLSN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0174 417 Gene3D Actin; Chain A, domain 4 1 62 - -
Ssu3g0174 417 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 2 371 - -
Ssu3g0174 417 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 286 364 IPR029048 -
Ssu3g0174 417 Gene3D - 111 127 - -
Ssu3g0174 417 ProSitePatterns Heat shock hsp70 proteins family signature 3. 84 98 IPR018181 -
Ssu3g0174 417 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 135 287 IPR029047 -
Ssu3g0174 417 PANTHER HEAT SHOCK PROTEIN 70KDA 2 371 IPR013126 GO:0005524|GO:0140662
Ssu3g0174 417 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 136 292 IPR029047 -
Ssu3g0174 417 PRINTS 70kDa heat shock protein signature 220 236 - -
Ssu3g0174 417 PRINTS 70kDa heat shock protein signature 140 159 - -
Ssu3g0174 417 PRINTS 70kDa heat shock protein signature 81 97 - -
Ssu3g0174 417 PRINTS 70kDa heat shock protein signature 113 133 - -
Ssu3g0174 417 Pfam Hsp70 protein 1 359 IPR013126 GO:0005524|GO:0140662
Ssu3g0174 417 Gene3D - 63 110 - -
Ssu3g0174 417 SUPERFAMILY Actin-like ATPase domain 2 132 IPR043129 -
Ssu3g0174 417 Gene3D - 288 361 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0174 Ssu-Chr3 3167109 3168362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0174 2 362 Calmodulin-binding Proteins AT3G12580 66.851 1.32e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0174 K03283 - gmx:100798636 654.44