Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0173 ATGGCAGGAAATGGTGGGACACCGGCGATAGGAATCGACCTGGGCACGACATACTCGTGCGTTGCAGTGTGGCAACACGACCAGGTGGAGATCATCGTGAACGACCAAGGGAACAGAACAACACCCTCTTGTGTTGCCTTCACTCACACCCAAAGGATGATTGGTGATGCTGCTATGAATGAGGCAGCATTCAATCCAACCAAAACTGTCTTTGatGTAAAGCGATTAATTGGAAGGAGATATAGCGACCCCATGGTTCAAAGTGATATGAAGCTATGGCCATTCAAAGTTATTGCTGATGTTAATGACAAGCCGATGATTGCTGTTAATTACAACTGTGAGGAAAAGCACTTCTATGCAGAACAAATTTCATCCATGGTTTTGGCAAAGATGCGTGAGATTGCAGAGGCTTTCCTTGGATCAACAGTGAAGAATGCTGTTATCACTGTGCCTGCTTACTACAATGATTCCCAGCGTCAAGCTACCAAAGATGCTGGTGCCATTGCTGGCCTCAATGTTTTGCGAATCATCAATGAGCCCACTGCTGCAGCAATTGCATATCGCCTTGCAATGAAAAATTGTAATCATGAAAGGAGGAATGTTTTCGTGTTTGATCTTGGTGGTGGTACTTTGGATGTGTCTCTTCTTGTATTTGAGAAGGACGATATCCAAGTTAAGGCCATTGCTGGAGACACTCACCTTGGGGGAGAGGACTTTGATAACAACATGGTGAATTACTGTGTGAATGAGTTTCAGAGAAAGTACAAAGTGGACATTAGTGGAAACCCAAGAGCCCTTAGGAGGTTGAGGACTGCTTGTGAGAAAGCAAAGAGAGAACTCTCTCGCACTATTGAGACCCGCATTGTGGTAGACTCTTTGTATGAGGGTATTGATTTCCGCTCATTAATAAGTCGCGCAAAGTTTGAGGAACTCAACAGGGACCACTTCAACAAGTGTATGGAGTTTGTGGAGAAGTGTCTAATGGATGCTAAGATGGACAAGAGTAGCGTTCATGATGTTGTCCTCGTAGGTGGATCTACAAGGATTCCCAAAGTGCAGCAACTATTAATTGACTTCTTTGATGGGAAGGTTCTCTGCAAACTCATCAATGCCGATGAGGCTGTTGCATATGGTGCCGCTGTCCATGCTTCTATATTGAGTGGTGAGTTCAGTGAGAAGGTTCAAAACACTTTACTGAGGGAAGTCACTCCTTTGTCCCTTGGGTTGCAAGAAGATGGAGGTATCATGAAAATAATCATCCCTAGGAATACTATCATTCCGACAAAGATGGAAGATGTAGTCACGACACATCTTGATCACCAAACCAAAGTCTTGATTCATGTTTACGAGGGTGAGAGGAAAACAACTAGAGACAACAACTTGTTGGGTAAATTTGTGCTAGACATTCCTCCAGCTCCGCGAGGTGTTCCTCAAATAAGTGTTTGCTTTGAGGTAGATGATGAGGGCATCTTACACGTCTCTGCTAAGGAAAAATCCAAGGGAATAACCAAGAAGGTAACCATAATTAGTGACAAAGGAAGGCTTTCAGAGGAAGAAATTAAGAGGATGATCTTTGAAGCTGAGAAGTATAAGGTTGAAGATGAGATGTATAGGAAGAAGGTAGAAGCAAAGCATGCATTGGAGAAGCATGCATACAACATAAGAGATGCTATAAACAGCGAGGAGATTAGTTTGAAGATTTCTCCGGAAGACAAGAAAAAGATCAACGATGCAATTGATTGTGCCTTACGGTGGGTTGATGTCAGTGTGGATGCAGAACAAGAAGATTTTGACAACAAGCGGCGCAATATTTCTAGCATTTTTGATCAAGTCATTGTGAAGATGATAAAGGGGGAAGATAATGGTGTGCTTCCAGGTGCTGTTGGTAGCAATAACGGAAAGAAGCGCTGGGTAAAAATATTGGCGAAATTTGCTCTCCATGCAGTATTTTCAGCTGTTACAGGTGACATCATTGGGTTTGTTTCTGTAATTGTTGACAGtttgtga 2007 0.429 MAGNGGTPAIGIDLGTTYSCVAVWQHDQVEIIVNDQGNRTTPSCVAFTHTQRMIGDAAMNEAAFNPTKTVFDVKRLIGRRYSDPMVQSDMKLWPFKVIADVNDKPMIAVNYNCEEKHFYAEQISSMVLAKMREIAEAFLGSTVKNAVITVPAYYNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYRLAMKNCNHERRNVFVFDLGGGTLDVSLLVFEKDDIQVKAIAGDTHLGGEDFDNNMVNYCVNEFQRKYKVDISGNPRALRRLRTACEKAKRELSRTIETRIVVDSLYEGIDFRSLISRAKFEELNRDHFNKCMEFVEKCLMDAKMDKSSVHDVVLVGGSTRIPKVQQLLIDFFDGKVLCKLINADEAVAYGAAVHASILSGEFSEKVQNTLLREVTPLSLGLQEDGGIMKIIIPRNTIIPTKMEDVVTTHLDHQTKVLIHVYEGERKTTRDNNLLGKFVLDIPPAPRGVPQISVCFEVDDEGILHVSAKEKSKGITKKVTIISDKGRLSEEEIKRMIFEAEKYKVEDEMYRKKVEAKHALEKHAYNIRDAINSEEISLKISPEDKKKINDAIDCALRWVDVSVDAEQEDFDNKRRNISSIFDQVIVKMIKGEDNGVLPGAVGSNNGKKRWVKILAKFALHAVFSAVTGDIIGFVSVIVDSL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0173 668 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 620 IPR029048 -
Ssu3g0173 668 Coils Coil 266 286 - -
Ssu3g0173 668 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 548 IPR029047 -
Ssu3g0173 668 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 36 48 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 58 66 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 476 492 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 369 389 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 146 166 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 209 219 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 396 415 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 8 21 - -
Ssu3g0173 668 PRINTS 70kDa heat shock protein signature 337 353 - -
Ssu3g0173 668 Pfam Hsp70 protein 9 615 IPR013126 GO:0005524|GO:0140662
Ssu3g0173 668 Gene3D - 71 126 - -
Ssu3g0173 668 Gene3D - 10 383 - -
Ssu3g0173 668 SUPERFAMILY Actin-like ATPase domain 9 189 IPR043129 -
Ssu3g0173 668 Gene3D Actin; Chain A, domain 4 235 318 - -
Ssu3g0173 668 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 3 626 - -
Ssu3g0173 668 Gene3D - 192 366 - -
Ssu3g0173 668 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 543 IPR029047 -
Ssu3g0173 668 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Ssu3g0173 668 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Ssu3g0173 668 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Ssu3g0173 668 Gene3D - 544 617 IPR029048 -
Ssu3g0173 668 PANTHER HEAT SHOCK PROTEIN 70KDA 3 626 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0173 Ssu-Chr3 3147892 3152174 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0173 1 618 Calmodulin-binding Proteins AT3G12580 68.174 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0173 K03283 - gmx:100798636 1088.17