Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g0172 | ATGATTGTTGTCAGCCAAAATGGTAAGGAAAAAAACTTTTATGCAGAACAAATTTCGTCCATGGTTTTGGCAAAGATGCGTGAGATTGCAGAGTGTTTCCTTGGTTCAACAATGAAGAATGCTGTTATCACTGTGCCTGCTTACTTCAGTGATTCCCAGCGTCAAGCTACCAAAGATGCTGGTGCCAGTGCTGGCCTCAATGTTTTGCGAATCATCAATGAGCCCACTGCTGCAGCAATTGCATATCGCcttgaaatgaaaaattgtaaTCATGAAAGGAGGAATGTTTTTGTGTTTGATCTTGGTGGTGGTACTTTGGATGTGTCTCTTCTTGTATTTGAGAAGGATGATATCCAAGTGAAGACTATTGCTGGAGACACTCACCTTGGGGGAGTGGACTTTGATAACAATATGGTGAAGTACTGTGTTAAGGAGTTTCGgagaaagaacaaaaaggaCATTAGTGAAAACTCAAAAGCCCTTGGGAGGTTGAGGAGTGCTTGTGAGAGAGCAAAGAGGACACTTTCCTGCACTCCCGAGGCTGCCATTGACCTACCgtgtttatatgaaaatattgacTTCTGTTTATCAATCAGTCGGAGAAAGTTTGAGGAACTCAACAGGGATCATTTTGTCAAGTGCATGGAGCTTGTGGAAAAATGTCTAACAGATGCTAAGGTGGATAAGACTAGTGTTCATGATGTTGTTCTTGTAGATGGCTCTACAAGGATTCCCAAAGTGCAGCAACTATTAGGGGACTTCTTTGATGGAAAGGATCTATGCAAGTGCATCAACCCCGATGAGGCTGTTGCTCATGGTGCTGCTGTCTTGGCTTCTAAATTGAGTGTTGAGTGCAATGAGAAGTTGTCACTGAGTGAAAATGTTCGAGACTTGTCACTGATGGAAGTCACCCCTTTGTCCCTTGGGTTGGAGACAAATGGAGGTATCATGAAAATAATCGTTCCTAGGAATACTGTCATTCCTACAAAGTTGGAAGATGAATTCACGACACACCTTGATAACCAAACCGATGTCTTGATTCATGTTTACGAGGGTGAGAGGCAAAAAGCTAGAGACAACAACTTGTTGGGTGATTTTGTGCTAAAAATTCCTCCTGCTCCGCGGGGTGTTCCACAAATCAGTGTTTGCTTTGAACTTGATGTTGAGGGCATCCTACACGTCTCTGCTAAGGAAAAATCCAGGGAAATAACCGAAAAGGTGACCATAATAAATGGCAAAGGAAGACTTTCAAAGGAAGAAATAGAGAGGATGATCTCAGAAGCAGAGAAGTACAAGGTTGAAGATGAGATGTATAGGAAGAAGGTAGAAGCAAGGCATGCATTGGAGAAGCATGCATACAACATGAGGGATGCTACAGACCACAAGGATATTAGTTTGAAGCTTTCCCCTGAAGACAAGGAAAAAATCAATGATGCAATTGATTGTACCTTCCAATGGCTTGAAGTCAACGAGGATGCAAAACTAGAAGATATTGACAACATGAGGAACGGTCTTTCTAGCGTTTTTGATTCAGTCATTGTGAAGATGATAAAGGGGGAGGACAATGACGGAAGGAGGCGTTGGTTAAAAATATTGGCGAAATTTGCTCTCCATGCGGTATATTCAGCTGTTACAGGTGACATCACTGGGTTTGTTTCTGTACTTGTTGACAGTTTgtga | 1680 | 0.4107 | MIVVSQNGKEKNFYAEQISSMVLAKMREIAECFLGSTMKNAVITVPAYFSDSQRQATKDAGASAGLNVLRIINEPTAAAIAYRLEMKNCNHERRNVFVFDLGGGTLDVSLLVFEKDDIQVKTIAGDTHLGGVDFDNNMVKYCVKEFRRKNKKDISENSKALGRLRSACERAKRTLSCTPEAAIDLPCLYENIDFCLSISRRKFEELNRDHFVKCMELVEKCLTDAKVDKTSVHDVVLVDGSTRIPKVQQLLGDFFDGKDLCKCINPDEAVAHGAAVLASKLSVECNEKLSLSENVRDLSLMEVTPLSLGLETNGGIMKIIVPRNTVIPTKLEDEFTTHLDNQTDVLIHVYEGERQKARDNNLLGDFVLKIPPAPRGVPQISVCFELDVEGILHVSAKEKSREITEKVTIINGKGRLSKEEIERMISEAEKYKVEDEMYRKKVEARHALEKHAYNMRDATDHKDISLKLSPEDKEKINDAIDCTFQWLEVNEDAKLEDIDNMRNGLSSVFDSVIVKMIKGEDNDGRRRWLKILAKFALHAVYSAVTGDITGFVSVLVDSL | 559 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g0172 | 559 | Gene3D | - | 446 | 518 | IPR029048 | - | |
Ssu3g0172 | 559 | PANTHER | HEAT SHOCK PROTEIN 70KDA | 1 | 527 | IPR013126 | GO:0005524|GO:0140662 | |
Ssu3g0172 | 559 | Gene3D | - | 22 | 278 | - | - | |
Ssu3g0172 | 559 | Gene3D | Actin; Chain A, domain 4 | 130 | 213 | - | - | |
Ssu3g0172 | 559 | ProSitePatterns | Heat shock hsp70 proteins family signature 2. | 98 | 111 | IPR018181 | - | |
Ssu3g0172 | 559 | Pfam | Hsp70 protein | 4 | 516 | IPR013126 | GO:0005524|GO:0140662 | |
Ssu3g0172 | 559 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 293 | 449 | IPR029047 | - | |
Ssu3g0172 | 559 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 292 | 445 | IPR029047 | - | |
Ssu3g0172 | 559 | Gene3D | - | 2 | 21 | - | - | |
Ssu3g0172 | 559 | PANTHER | HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE | 1 | 527 | - | - | |
Ssu3g0172 | 559 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 443 | 521 | IPR029048 | - | |
Ssu3g0172 | 559 | SUPERFAMILY | Actin-like ATPase domain | 92 | 281 | IPR043129 | - | |
Ssu3g0172 | 559 | Gene3D | - | 87 | 261 | - | - | |
Ssu3g0172 | 559 | PRINTS | 70kDa heat shock protein signature | 104 | 114 | - | - | |
Ssu3g0172 | 559 | PRINTS | 70kDa heat shock protein signature | 377 | 393 | - | - | |
Ssu3g0172 | 559 | PRINTS | 70kDa heat shock protein signature | 232 | 248 | - | - | |
Ssu3g0172 | 559 | PRINTS | 70kDa heat shock protein signature | 41 | 61 | - | - | |
Ssu3g0172 | 559 | PRINTS | 70kDa heat shock protein signature | 264 | 284 | - | - | |
Ssu3g0172 | 559 | PRINTS | 70kDa heat shock protein signature | 297 | 316 | - | - | |
Ssu3g0172 | 559 | SUPERFAMILY | Actin-like ATPase domain | 2 | 85 | IPR043129 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g0172 | Ssu-Chr3 | 3112183 | 3113862 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g0172 | 1 | 523 | Calmodulin-binding Proteins | AT3G12580 | 62.595 | 0.0 | 655 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g0172 | K03283 | - | gmx:100798636 | 813.142 |