Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0172 ATGATTGTTGTCAGCCAAAATGGTAAGGAAAAAAACTTTTATGCAGAACAAATTTCGTCCATGGTTTTGGCAAAGATGCGTGAGATTGCAGAGTGTTTCCTTGGTTCAACAATGAAGAATGCTGTTATCACTGTGCCTGCTTACTTCAGTGATTCCCAGCGTCAAGCTACCAAAGATGCTGGTGCCAGTGCTGGCCTCAATGTTTTGCGAATCATCAATGAGCCCACTGCTGCAGCAATTGCATATCGCcttgaaatgaaaaattgtaaTCATGAAAGGAGGAATGTTTTTGTGTTTGATCTTGGTGGTGGTACTTTGGATGTGTCTCTTCTTGTATTTGAGAAGGATGATATCCAAGTGAAGACTATTGCTGGAGACACTCACCTTGGGGGAGTGGACTTTGATAACAATATGGTGAAGTACTGTGTTAAGGAGTTTCGgagaaagaacaaaaaggaCATTAGTGAAAACTCAAAAGCCCTTGGGAGGTTGAGGAGTGCTTGTGAGAGAGCAAAGAGGACACTTTCCTGCACTCCCGAGGCTGCCATTGACCTACCgtgtttatatgaaaatattgacTTCTGTTTATCAATCAGTCGGAGAAAGTTTGAGGAACTCAACAGGGATCATTTTGTCAAGTGCATGGAGCTTGTGGAAAAATGTCTAACAGATGCTAAGGTGGATAAGACTAGTGTTCATGATGTTGTTCTTGTAGATGGCTCTACAAGGATTCCCAAAGTGCAGCAACTATTAGGGGACTTCTTTGATGGAAAGGATCTATGCAAGTGCATCAACCCCGATGAGGCTGTTGCTCATGGTGCTGCTGTCTTGGCTTCTAAATTGAGTGTTGAGTGCAATGAGAAGTTGTCACTGAGTGAAAATGTTCGAGACTTGTCACTGATGGAAGTCACCCCTTTGTCCCTTGGGTTGGAGACAAATGGAGGTATCATGAAAATAATCGTTCCTAGGAATACTGTCATTCCTACAAAGTTGGAAGATGAATTCACGACACACCTTGATAACCAAACCGATGTCTTGATTCATGTTTACGAGGGTGAGAGGCAAAAAGCTAGAGACAACAACTTGTTGGGTGATTTTGTGCTAAAAATTCCTCCTGCTCCGCGGGGTGTTCCACAAATCAGTGTTTGCTTTGAACTTGATGTTGAGGGCATCCTACACGTCTCTGCTAAGGAAAAATCCAGGGAAATAACCGAAAAGGTGACCATAATAAATGGCAAAGGAAGACTTTCAAAGGAAGAAATAGAGAGGATGATCTCAGAAGCAGAGAAGTACAAGGTTGAAGATGAGATGTATAGGAAGAAGGTAGAAGCAAGGCATGCATTGGAGAAGCATGCATACAACATGAGGGATGCTACAGACCACAAGGATATTAGTTTGAAGCTTTCCCCTGAAGACAAGGAAAAAATCAATGATGCAATTGATTGTACCTTCCAATGGCTTGAAGTCAACGAGGATGCAAAACTAGAAGATATTGACAACATGAGGAACGGTCTTTCTAGCGTTTTTGATTCAGTCATTGTGAAGATGATAAAGGGGGAGGACAATGACGGAAGGAGGCGTTGGTTAAAAATATTGGCGAAATTTGCTCTCCATGCGGTATATTCAGCTGTTACAGGTGACATCACTGGGTTTGTTTCTGTACTTGTTGACAGTTTgtga 1680 0.4107 MIVVSQNGKEKNFYAEQISSMVLAKMREIAECFLGSTMKNAVITVPAYFSDSQRQATKDAGASAGLNVLRIINEPTAAAIAYRLEMKNCNHERRNVFVFDLGGGTLDVSLLVFEKDDIQVKTIAGDTHLGGVDFDNNMVKYCVKEFRRKNKKDISENSKALGRLRSACERAKRTLSCTPEAAIDLPCLYENIDFCLSISRRKFEELNRDHFVKCMELVEKCLTDAKVDKTSVHDVVLVDGSTRIPKVQQLLGDFFDGKDLCKCINPDEAVAHGAAVLASKLSVECNEKLSLSENVRDLSLMEVTPLSLGLETNGGIMKIIVPRNTVIPTKLEDEFTTHLDNQTDVLIHVYEGERQKARDNNLLGDFVLKIPPAPRGVPQISVCFELDVEGILHVSAKEKSREITEKVTIINGKGRLSKEEIERMISEAEKYKVEDEMYRKKVEARHALEKHAYNMRDATDHKDISLKLSPEDKEKINDAIDCTFQWLEVNEDAKLEDIDNMRNGLSSVFDSVIVKMIKGEDNDGRRRWLKILAKFALHAVYSAVTGDITGFVSVLVDSL 559
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0172 559 Gene3D - 446 518 IPR029048 -
Ssu3g0172 559 PANTHER HEAT SHOCK PROTEIN 70KDA 1 527 IPR013126 GO:0005524|GO:0140662
Ssu3g0172 559 Gene3D - 22 278 - -
Ssu3g0172 559 Gene3D Actin; Chain A, domain 4 130 213 - -
Ssu3g0172 559 ProSitePatterns Heat shock hsp70 proteins family signature 2. 98 111 IPR018181 -
Ssu3g0172 559 Pfam Hsp70 protein 4 516 IPR013126 GO:0005524|GO:0140662
Ssu3g0172 559 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 293 449 IPR029047 -
Ssu3g0172 559 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 292 445 IPR029047 -
Ssu3g0172 559 Gene3D - 2 21 - -
Ssu3g0172 559 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 527 - -
Ssu3g0172 559 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 443 521 IPR029048 -
Ssu3g0172 559 SUPERFAMILY Actin-like ATPase domain 92 281 IPR043129 -
Ssu3g0172 559 Gene3D - 87 261 - -
Ssu3g0172 559 PRINTS 70kDa heat shock protein signature 104 114 - -
Ssu3g0172 559 PRINTS 70kDa heat shock protein signature 377 393 - -
Ssu3g0172 559 PRINTS 70kDa heat shock protein signature 232 248 - -
Ssu3g0172 559 PRINTS 70kDa heat shock protein signature 41 61 - -
Ssu3g0172 559 PRINTS 70kDa heat shock protein signature 264 284 - -
Ssu3g0172 559 PRINTS 70kDa heat shock protein signature 297 316 - -
Ssu3g0172 559 SUPERFAMILY Actin-like ATPase domain 2 85 IPR043129 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu3g0172 Ssu-Chr3 3112183 3113862 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0172 1 523 Calmodulin-binding Proteins AT3G12580 62.595 0.0 655
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0172 K03283 - gmx:100798636 813.142