Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0171 ATGGTAGCACCCGCAATAGGAATCGATCTAGGCACGACATACTCGTGCGTTGCAGTGTGGCGACACGACCGGGTGGAGATGATCGTGAACGACCAAGGAAACAGAACAACACCCTCTTATGTTGCCTTCAATCGCACCCACAGGATGGTTGGTGATGCTGCCAAGAATCAGGCTGATACTAACCCAACCAACACTGTCTACGatGCAAAGCGATTAATTGGAAGGAGATATAGCGACCCTGTGGTTCAAAGTGATATGAAGCTTTGGCTTGGCCATTCAAAGTTATAG 288 0.4861 MVAPAIGIDLGTTYSCVAVWRHDRVEMIVNDQGNRTTPSYVAFNRTHRMVGDAAKNQADTNPTNTVYDAKRLIGRRYSDPVVQSDMKLWLGHSKL 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0171 95 Pfam Hsp70 protein 5 89 IPR013126 GO:0005524|GO:0140662
Ssu3g0171 95 PRINTS 70kDa heat shock protein signature 32 44 - -
Ssu3g0171 95 PRINTS 70kDa heat shock protein signature 4 17 - -
Ssu3g0171 95 PRINTS 70kDa heat shock protein signature 54 62 - -
Ssu3g0171 95 Gene3D - 1 93 - -
Ssu3g0171 95 PANTHER HEAT SHOCK PROTEIN 70KDA 3 89 IPR013126 GO:0005524|GO:0140662
Ssu3g0171 95 SUPERFAMILY Actin-like ATPase domain 4 90 IPR043129 -
Ssu3g0171 95 PANTHER 70 KDA HEAT SHOCK PROTEIN 3 89 - -
Ssu3g0171 95 ProSitePatterns Heat shock hsp70 proteins family signature 1. 8 15 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0171 Ssu-Chr3 3110101 3112162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0171 3 89 Calmodulin-binding Proteins AT5G02500 78.161 5.12e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0171 K03283 - gmx:100783822 155.992