Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0170 ATGTCAGAAGCTAGTCCTTATACCGTTGATGTTGCAAATATGAGAAATGGTAATCTTCTACCATCAGTTTCTTCAAGGCTTCACTGCTATGGAAACGATGAGGTTCAGTTAGAAATGTTAGAGGGCTCCTTGCAGATGAATGACCTAATCAATGGCTTCAACATAGAGTCTATAATATTCAACAATGACAGCCAATTGGGTAACGGAGTCCATACACAGCCTAGCCAGACTCAGTCTCTGATTTATGACTACAATCATCACCCAGGTAGTCTCTATGCCATCCCAAGCAGCAAAGACATTTCTCAGCAATCATTGTCACTTGACAAAGACCCTTCTCAATATGAAGGAGTATGTGGAAATGCCAGAAAACGTCCATTTGAGTACACTGACAACATGTCCTtgtggaaaaagataaaaagcaaTTCGAAAAGCAAAATCACAATCATGGAACCGAAATGGCATCAAGCAAAAGAAGTTTCAAAGATAATCCCTCCGCACAAATTGCATGTGCCTACGAGGAGAAATCAGAAGCTTAGTGATAAAGTTACAACTCTACAAAAGTTGGTTTCACCTTTTGGCAAGACTGACACCGCTTCAGTTCTTCATGAGGCTTCTCTTTATATTAAGCTTCTTCAAGAACAAATACAGACTTTGTTTCAGATGCTGAGCTTCTCTTACATTAGTTCAATCAAAGATCCTCGTATTCAGGAATGTGGGGACAAATTGCAGGTTGACCTAAGGAGCAGAGGACTTTGTTTGGTTCCCGTATCAATCACAGAGAAAGTAACAATGGTAGACCAGATTCATCATGCTTCAGCCTCAAGAATTATTCACTCctga 840 0.3917 MSEASPYTVDVANMRNGNLLPSVSSRLHCYGNDEVQLEMLEGSLQMNDLINGFNIESIIFNNDSQLGNGVHTQPSQTQSLIYDYNHHPGSLYAIPSSKDISQQSLSLDKDPSQYEGVCGNARKRPFEYTDNMSLWKKIKSNSKSKITIMEPKWHQAKEVSKIIPPHKLHVPTRRNQKLSDKVTTLQKLVSPFGKTDTASVLHEASLYIKLLQEQIQTLFQMLSFSYISSIKDPRIQECGDKLQVDLRSRGLCLVPVSITEKVTMVDQIHHASASRIIHS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0170 279 CDD bHLH_AtbHLH_like 173 218 IPR045239 -
Ssu3g0170 279 Gene3D - 169 225 IPR036638 GO:0046983
Ssu3g0170 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Ssu3g0170 279 PANTHER TRANSCRIPTION FACTOR BHLH112 45 265 - -
Ssu3g0170 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 222 IPR036638 GO:0046983
Ssu3g0170 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0170 Ssu-Chr3 3051229 3054401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0170 164 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 48.544 6.89e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0170 - - ccaj:109812405 432.18