Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0169 ATGGTGAACGTGATGGAGTGGCAGAAGCAGCGTTGGCAACCGAACGGGAACTCTGAAATGATGTATGTCAAAGTGATGACCGACGAACAACTCGAGACTCTGCGCAAACAAATTGCTGTTTACGCAACCATCTGCGAACAACTCATCGAGATGCACAAAACCATCTCCGCGCACCAAGATCTCGCAGGGATTAGGCTGGGAAATATGTACTGTGATCCATTGTTGGGGTCTGGGGGGCACAAAATAGCTTCAAGGCAGCGGTGGACTCCGACAGCCATGCAGCTTCAGATTCTGGAGCGGATATTTGATCAGGGAACTGGGACTCCCAGCAAGGAAAAGATCAAGGATATCACTGCTGAGCTCAGCCAGCATGGCCAGATTTCTGAGACTAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGTTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGTCCCCGCCTAGCGTTTCTGCTGGGCCTGCTGATAATTTGGGCTTCCAGAACCCGGGTAATTTGCAGTACTTGAATCCAGAGTCCAACAAACCGGATTCTGTGTTCCCATCTGATGGCAGTTTAAGATCCACGAGAAATTTTGATCATGTGCCTGTTTTTGATGGGCTGCTATCAAACTCAAGGAGCAACTATCTAACTGGAAAAATGGAAGCACCTGAGAACTACGACTTATACCAGCCAGCAAGTGACTACAGCATGGCAGGTTGA 798 0.4837 MVNVMEWQKQRWQPNGNSEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTISAHQDLAGIRLGNMYCDPLLGSGGHKIASRQRWTPTAMQLQILERIFDQGTGTPSKEKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSVNAESEVETEVDSKDKKTKPDEFQSPPSVSAGPADNLGFQNPGNLQYLNPESNKPDSVFPSDGSLRSTRNFDHVPVFDGLLSNSRSNYLTGKMEAPENYDLYQPASDYSMAG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0169 265 SMART HOX_1 83 150 IPR001356 GO:0003677
Ssu3g0169 265 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Ssu3g0169 265 MobiDBLite consensus disorder prediction 160 175 - -
Ssu3g0169 265 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 264 IPR044559 GO:0003700
Ssu3g0169 265 MobiDBLite consensus disorder prediction 176 217 - -
Ssu3g0169 265 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Ssu3g0169 265 CDD homeodomain 85 147 IPR001356 GO:0003677
Ssu3g0169 265 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Ssu3g0169 265 Gene3D - 86 151 - -
Ssu3g0169 265 PANTHER - 3 264 - -
Ssu3g0169 265 MobiDBLite consensus disorder prediction 143 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0169 Ssu-Chr3 3045972 3050531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0169 4 265 Wox Gene Family AT4G35550 51.064 4.98e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu3g0169 Homeodomain 6.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0169 - - gmx:100784355 503.827