Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0166 ATGACAATGGCCGCCGGCATCGACATGTCCCTCGACGATATCATCAGGCGGTCCTCCGCCGCGGTTTCTCGCCGCCGAGTCACGTTTGTTCGGAACCCTACCAGAACGACGCCGTACCCCATCCCACAGGCAAGGCAATACAACATGATTCCGGAAATGGTTTTCGACGACGATGGTGCGGCTAAGATTGAAAGTGGCACCAAACTCTACATATCTAACTTGGATCATGGAGTTTCCAGCGATGATATCAAGCTGCTGTTCTCGGAAGAGGGTGAATTGAAAAGATACTCCATTCATTATGACCAGAGTGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCATGAGGCACTCTGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACAAGTTCGGTTACTCCAGCTGTCGCGCCTCTTTATCAAAGTGGCTTACTGGAAAGACCAAATGATGTCCTCTTAAGCAAACGAGGATGGGTTGGAGGTAGAGGGTTCCACAATGACTTTGCACTGGATCGCCTTCCAAGGGGCCGTGGAGAAGAGAAGGACTATATTCGAAAGgtatattttagagattttgaTCATGCCTTGGAAAGGTCTCACCGCCTTCCGAGAGGCCACGCAAAAGTAAAGGGCAATATTGGAAAGGTGACTGTTAAAGATCTTGATGATGACTTGGAGAGGTATCACTTAGAGGCTAAGCagataaaaaaggtaaatggAAAGTGA 771 0.4578 MTMAAGIDMSLDDIIRRSSAAVSRRRVTFVRNPTRTTPYPIPQARQYNMIPEMVFDDDGAAKIESGTKLYISNLDHGVSSDDIKLLFSEEGELKRYSIHYDQSGRSKGTAEVVFMRHSDALAAIKKYNNMRLDGKPLQIELVGTSSVTPAVAPLYQSGLLERPNDVLLSKRGWVGGRGFHNDFALDRLPRGRGEEKDYIRKVYFRDFDHALERSHRLPRGHAKVKGNIGKVTVKDLDDDLERYHLEAKQIKKVNGK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0166 256 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 3 250 - -
Ssu3g0166 256 CDD RRM_THOC4 67 141 - -
Ssu3g0166 256 Gene3D - 55 198 IPR012677 -
Ssu3g0166 256 SMART rrm1_1 68 140 IPR000504 GO:0003723
Ssu3g0166 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 144 IPR000504 GO:0003723
Ssu3g0166 256 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Ssu3g0166 256 Coils Coil 233 253 - -
Ssu3g0166 256 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 3 250 - -
Ssu3g0166 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0166 Ssu-Chr3 3001267 3003491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0166 58 142 Eukaryotic Initiation Factors Gene Family AT2G23350 35.294 6.06e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0166 K12881 - gmx:100785926 379.022