Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0164 ATGGATAATTATGGGTCATCTTCTCCATACCGGTATCCAAACCCATATATGTACCCTCCCAACCCTCATCAACCATACCCTCCTCCTCCAGGTTCAGCTCCTGATCCATATGCACATGTTCCTTATCATCCATATCCTTACCATTCTTCACATTCCTTCAATTATTCCTATCCTCCACCTCCTAGATCTTCCTCACATTCTGACAAATTTGAGTATTCCTACCCCCCTCCTTTCCCTTTGGATTTTCCCTACCCTCCACCATCTTATGCTCATCCTCCCTCGTATCCTTATCCCTACCATGTTCCTCCACCAAATCATGGTTCTCCTAGGCCTTCCCTGTCACACCATGCTAGTTTCCAACATGGATcatctcattattattatccacCAAGTGAGGCCTATTCGGCTCCCGAAGACCGTCCCGATGCCCATTCGCGTGCCAATAGCTTCTCTGGTCCCTACTGGCAGGATGACACAAGCACTGCAGGAGGTGGAGTGTCACAAACTAGTGATAATTCCAAGCCTTCTCAGGGTTCTGCTTACCCGCCTTTGGATGATCTTGTGAGCAATGTTAAGTTGTCCGATGACCAGCCTACTGCTCCTGCATCGCTGCCTGCGCCTGCAGTGCAACCACTGATGCATTCCATTTCAGTTCCAAAGTTGCAACAGAAGAGAGAGGACTTTTACGGATATTCGAATAACTCCTTCTCGGGGTGGGGATCCTCCTACCAGAATCGGGTGGATTCGTCTGGACTCTCAAATTTTTCTGGCTCATTTAATGAATCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAGTGCAGAACAAAGGGTCCTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATATGGGTTATTGAAGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACATTAGGGGATATGTTTGGTAAATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACTATGAATAAGAAGATTACTAGTGATCCTTATGTATCAATTTCATTATCCAATGCTGTAATTGGAAGGACTTATGTCATTAGCAACTCTGAAAATCCTGTTTGGTTGCAACATTTCTATGTTCCTGTTGCGCATCATGCTGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATATTGTGGGTTCACAGCTCATTGGCATTGTGGCAATACCAGTGGAACAAATATACTCAGGAGCAAAAGTTGAAGGAATCTACCCTGTCCTGAATAATAATGGGAAGCCTTGTAAGCAAGGTGCTGTCCTGAGCCTATCCATTCAGTACATACCTATGGAGGAACTGAGCATTTATCACCAAGGAGTGGGAGCAGGGCCTGAATACATTGGAGTTCCTGGCACATATTTTCCTTTGAGGAAAGGTGGAACCGTTACTCTGTATCAAGATGCTCATGTTCCAGATGGCAGCCTCCCTAATGTGTTGCTTGACAATGGAATGTATTATGTGAATGGAAAGTGTTGGCGTGATATCTTTGATGTCGTAAGTCAAGCTCGGCGTTTGATTTATATTACAGGATGGTCAGTGTGGCACAAAGTAAGGTTGGTCAGGGATGCTGGTGGTTATGCTTCAGATTATACCTTGGGTGATCTTCTACGGACAAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTATCTGGGATGATCCTACGTCAAGAAGCATTTTAGGTTATAAAACAGATGGTGTAATGGCAACTCATGATGAGGAAACTCGACGGTTTTTCAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGCAGTGGCAAACGACATAGCTGGATCAAGCAAAAGgAAGTTGGAACAATATACACACATCATCAGAAAAATGTGATTGTGGATGCTGATGCTGGAAATAacagaagaaaaattatagcaTTTGTTGGTGGACTTGATTTGTGTGACGGGCGATATGATACTCCCCACCATCCTCTTTTTAGAACATTGAATACAATACATAAGGATGACTACCACAACCCTACTTTCACGGGTAATGTTGGTGGTTGTCCACGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATgttttaactaactttgaggAGCGCTGGTTAAGAGCTTCGAAACCTCATGGgattaaaaagttgaaaatttcatACGATGATGCTTTGCTAAGGTTGGAAAGAATTCCAGATGTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCTGTCAAGGGGTTTCCAAAGGATCCAAAAGATGCAACAAGCAAGAACCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTTAAGGCCATTCGTGCTGCACAACATTACATTTACATAGAGAATCAATATTTCATTGGCTCTTCATACAATTGGAGTCAACATAAAGACCTTGGTGCTAATAACTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATTAAAGCAAATGAGAGATTCGCAGTGTATATTGTTATTCCAATGTGGCCAGAAGGTGTTCCAACAGGGGCTGCCACACAAAGGATTCTATTTTGGCAGaATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAGGCAGGGATTGAAGCAGCATTTTCACTACAAGATTATTTGAACTTTTTCTGTCTTGGCAATCGGGAGGCCATGAGTTCATATGATAATGTCAGTGTGACTGGAGCTCCTCCCCCAGCAAATAGTCCACAAGCAGCCAGCCGAAGTAGCCAACGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGATCCATGGAAGGAACAAGGGATAGTGAGATTGCAATGGGGGCCTATCAACCTCATCATACGTGGGCAAGAAAACAATCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCGGAACATACAGGAACAATTGAAGACTGCTTCTTACAGCCTGAGAGCCTTGAATGTGTAAGAAGGGTTAGAGCAATGGGTGAAATGAACTGGAAACAATTTTCAGCAAATGAAGTAACAGAGATGACAGGGCATCTACTAAAATACCCGGTAGAAGTTGATCGAAAGGGCAAGGTTAGATCCCTTCCTGGCTGTGAAGAGTTCCCAGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3303 0.4181 MDNYGSSSPYRYPNPYMYPPNPHQPYPPPPGSAPDPYAHVPYHPYPYHSSHSFNYSYPPPPRSSSHSDKFEYSYPPPFPLDFPYPPPSYAHPPSYPYPYHVPPPNHGSPRPSLSHHASFQHGSSHYYYPPSEAYSAPEDRPDAHSRANSFSGPYWQDDTSTAGGGVSQTSDNSKPSQGSAYPPLDDLVSNVKLSDDQPTAPASLPAPAVQPLMHSISVPKLQQKREDFYGYSNNSFSGWGSSYQNRVDSSGLSNFSGSFNESVHSQSLQIVPVQNKGSLRVLLLHGNLDIWVIEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMNKKITSDPYVSISLSNAVIGRTYVISNSENPVWLQHFYVPVAHHAAEVHFVVKDSDIVGSQLIGIVAIPVEQIYSGAKVEGIYPVLNNNGKPCKQGAVLSLSIQYIPMEELSIYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVLLDNGMYYVNGKCWRDIFDVVSQARRLIYITGWSVWHKVRLVRDAGGYASDYTLGDLLRTKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKNVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPHHPLFRTLNTIHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRASKPHGIKKLKISYDDALLRLERIPDVIGINDAPSVGEDDPEVWHVQIFRSIDSNSVKGFPKDPKDATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGIEAAFSLQDYLNFFCLGNREAMSSYDNVSVTGAPPPANSPQAASRSSQRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRAMGEMNWKQFSANEVTEMTGHLLKYPVEVDRKGKVRSLPGCEEFPDVGGKIVGSFLAMKENLTI 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0164 1100 Pfam Phospholipase D Active site motif 947 973 IPR001736 GO:0003824
Ssu3g0164 1100 Pfam Phospholipase D Active site motif 612 646 IPR001736 GO:0003824
Ssu3g0164 1100 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 646 IPR001736 GO:0003824
Ssu3g0164 1100 SUPERFAMILY Phospholipase D/nuclease 480 710 - -
Ssu3g0164 1100 CDD C2_plant_PLD 281 433 - -
Ssu3g0164 1100 SMART pld_4 946 973 IPR001736 GO:0003824
Ssu3g0164 1100 SMART pld_4 611 646 IPR001736 GO:0003824
Ssu3g0164 1100 PANTHER PHOSPHOLIPASE D 183 1100 IPR015679 -
Ssu3g0164 1100 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 284 435 IPR035892 -
Ssu3g0164 1100 Gene3D C2 domain 281 425 IPR035892 -
Ssu3g0164 1100 Gene3D Endonuclease Chain A 759 1001 - -
Ssu3g0164 1100 SUPERFAMILY Phospholipase D/nuclease 777 1032 - -
Ssu3g0164 1100 Pfam C2 domain 286 412 IPR000008 -
Ssu3g0164 1100 MobiDBLite consensus disorder prediction 95 207 - -
Ssu3g0164 1100 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 946 973 IPR001736 GO:0003824
Ssu3g0164 1100 MobiDBLite consensus disorder prediction 95 109 - -
Ssu3g0164 1100 MobiDBLite consensus disorder prediction 111 125 - -
Ssu3g0164 1100 Pfam Phospholipase D C terminal 1020 1090 IPR024632 -
Ssu3g0164 1100 ProSiteProfiles C2 domain profile. 264 410 IPR000008 -
Ssu3g0164 1100 MobiDBLite consensus disorder prediction 149 179 - -
Ssu3g0164 1100 Gene3D Endonuclease Chain A 489 725 - -
Ssu3g0164 1100 PANTHER PHOSPHOLIPASE D ALPHA 1 183 1100 - -
Ssu3g0164 1100 SMART C2_3c 287 409 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0164 Ssu-Chr3 2957099 2969463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0164 63 1100 Phospholipase D Gene Family (Wang group) AT2G42010 70.561 0.0 1491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0164 K01115 - gmx:100801286 1917.12