Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0162 ATGTTTGGTTTTGCTGCCCATCTTTCCAAGAAACAACTTAAATACTTGAACCAAGTGGATGGTTTCCTCTCAGCCATACCTGATGAACTATCAACCCTCCACACAACATACACCCCACACTTTCTTGGCCTAAGGAATGGAACAGCACTTTGGACTGCTTCTAACTTGGCCTCAGATGTGATTATTGGGGTCCTTGATACAGGAATATGGCCTGAACACATGAGTTTCCAGGACTCAGGTTTGTCCCCAGTACCTTCTCGTTGGAAAGGTGTTTGTGAACAAGGCACCAAGTTCTCTTCCTCAAATTGTAACAAGAAGCTTATTGGTGCAAGAGCCTATTTCAAGGGCTATGAAAAATCAGTTGGAAAAATCAATGAAACAGTGGATTATCTTTCCCCAAGAGATTCCCAAGGGCATGGAACACACACTGCCTCAACTGCAGCTGGTGATATGGTGAAAAATGCCAACCTTTTTGGCCAGGCTAGAGGTACAGCAAGTGGAATGAGGTATTCCTCAAGAATTGCAGCTTATAAAGTATGCTGGCCTTCTGGCTGTGCTAATTCTGATGTATTAGCTGCCATGGACCAAGCAGTTTCTGATGGGGTTGATGTGTTGTCACTCTCTTTAGGGACTATTCCCAAAcctttttataatgatagcatTGCCATAGCTTCATTTGGAGCAACCAACAAAGGGGTTTTTTTTGCTTGCTCCGCAGGCAATTTTGGCCCCTTTCCATCAACAGTTGCAAATGGCGCCCCATGGATCATGACAGTTGCTGCTAGCTCGACTGACCGAACCTTTCCAACAAAAGTGAAGCTTGGGAATGGAAAATTTTTCAAAGGGTCATCTTTATATCAAGGTAAGCAGACAAACCAATTGCCCCTTGTCTATGCCAAATCAGCAGGTACAAAAAAGGAAGCACAGTATTGCATCGGAGGGTCCCTTGATTCAAAGCTTGTGCATGGGAAAATAGTTGCTTGTGAAAGAGGAATAAATGGTAGAACTGAAAAGGGAGAGGAAGTGAAAGTGGCAGGTGGGGCAGGAATGATACTACTTAACACTGAATTTCATGGAGAAGAGCTTTTTGCTGACCCTCATGTTTTGCCAGCCACTTCCTTAGGGGCTTCAGCAAGTAAGACTATTAGAAGCTATATTCAATCTGTTAAAAAACCAACagcttcaatttcttttatggGGACAAGGTATGGTGACCCTGCACCAGTAATGGCAGCATTTTCTTCTAGAGGACCAAGTATAGTGGGACCAGATGTGATTAAGCCAGATGTTACTGCACCTGGTCTGAACATCTTGGCTGCTTGGCCAACCAAAACTAGCCCAAGTTTTCTCCCGAGTGACAAAAGAAGAGTACTATTTAACATACTTTCAGGTACCTCAATGTCTTGCCCTCATGTTAGTGGCATAGCAGCACTGCTTAAGTCTTTGCACAAAGATTGGTCCCCTGCAGCTATCAAATCTGCTCTGATGACTACTGCTTACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCCTCAAATAACTCACCATTTGCTAACCCTTTTGCATTTGGTTCGGGTCATGTTAACGCTGTAAGTGCTTCTGATCCAGGGTTAGTGTATGATATCAGCACCAAAgactatttaaattatttatgcagCATAAACTATACCTCTTCCCAGATTGCTTTATTTTCAAGAGGTAACTTTGTATGTTCTAAAAAAGCAGTTCTTCAAGCTGGAGACTTGAACTACCCTTCATTTGCTGTTCTATTTGGCAAAAGTGCCTTAAATGCTAGTGTGACATACAAGAGGATTGTCACAAATGTTGGAAAACCCCAAGGTGCTTATGCAGTTAAAGTGGAACAGCCAAATGGAGTTTCAGTTACTGTTGTACCAAGGATATTGAAGTTTGAAAAAGTGGGTCAGAAGTTGAGCTACAAGGTGACATTTTTGGCAATTGGAGGAGCAAGAGTTGGGGGTACTTCATCATTTGGGTCATTGATTTGGGTATCTGGCAGATATAAAGTCAGAAGTCCTATAGCAGTAACCTGGGAATAG 2064 0.4176 MFGFAAHLSKKQLKYLNQVDGFLSAIPDELSTLHTTYTPHFLGLRNGTALWTASNLASDVIIGVLDTGIWPEHMSFQDSGLSPVPSRWKGVCEQGTKFSSSNCNKKLIGARAYFKGYEKSVGKINETVDYLSPRDSQGHGTHTASTAAGDMVKNANLFGQARGTASGMRYSSRIAAYKVCWPSGCANSDVLAAMDQAVSDGVDVLSLSLGTIPKPFYNDSIAIASFGATNKGVFFACSAGNFGPFPSTVANGAPWIMTVAASSTDRTFPTKVKLGNGKFFKGSSLYQGKQTNQLPLVYAKSAGTKKEAQYCIGGSLDSKLVHGKIVACERGINGRTEKGEEVKVAGGAGMILLNTEFHGEELFADPHVLPATSLGASASKTIRSYIQSVKKPTASISFMGTRYGDPAPVMAAFSSRGPSIVGPDVIKPDVTAPGLNILAAWPTKTSPSFLPSDKRRVLFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASNNSPFANPFAFGSGHVNAVSASDPGLVYDISTKDYLNYLCSINYTSSQIALFSRGNFVCSKKAVLQAGDLNYPSFAVLFGKSALNASVTYKRIVTNVGKPQGAYAVKVEQPNGVSVTVVPRILKFEKVGQKLSYKVTFLAIGGARVGGTSSFGSLIWVSGRYKVRSPIAVTWE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0162 687 ProSitePatterns Serine proteases, subtilase family, serine active site. 464 474 IPR023828 -
Ssu3g0162 687 PRINTS Subtilisin serine protease family (S8) signature 463 479 IPR015500 -
Ssu3g0162 687 PRINTS Subtilisin serine protease family (S8) signature 57 76 IPR015500 -
Ssu3g0162 687 PRINTS Subtilisin serine protease family (S8) signature 135 148 IPR015500 -
Ssu3g0162 687 Pfam PA domain 294 380 IPR003137 -
Ssu3g0162 687 SUPERFAMILY Subtilisin-like 33 540 IPR036852 GO:0004252|GO:0006508
Ssu3g0162 687 CDD PA_subtilisin_like 272 396 - -
Ssu3g0162 687 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 1 687 - -
Ssu3g0162 687 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 62 73 IPR023827 -
Ssu3g0162 687 Pfam Fibronectin type-III domain 583 684 IPR041469 -
Ssu3g0162 687 ProSiteProfiles Serine proteases, subtilase domain profile. 36 536 - -
Ssu3g0162 687 Gene3D - 265 403 - -
Ssu3g0162 687 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 687 IPR045051 -
Ssu3g0162 687 Gene3D - 553 686 - -
Ssu3g0162 687 CDD Peptidases_S8_3 32 500 IPR034197 -
Ssu3g0162 687 Pfam Subtilase family 58 506 IPR000209 GO:0006508|GO:0008236
Ssu3g0162 687 Gene3D Peptidase S8/S53 domain 59 549 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0162 Ssu-Chr3 2935280 2937343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0162 1 687 Subtilisin-like Serine Gene Family AT1G01900 60.522 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0162 - - gmx:100790006 1248.42