Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0154 ATGGTCCACAAAAACGGCTTAGCTGAAGGTGAGGACCCCACGTTAAGGACCGCTTGTGAGAGAGCAAAGAGGACGCTCTCATCCACTGCTCAGACCACCATTGAGATTGATTCCCTATTTGAGGGCATTGATTTCTATTCAACAATCACTCGTGCCAGGTTTGAGGAACTCAATATGGACCTTTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGTCTTAGAGATGCAAAGATGGACAAGAGCACTGTCCATGATGTTGTCCTTGTTGGTGGCTCTACTAGGATTCCCAAAGTTCAGCAGCTGTTGCAGGACTTCTTCAATGGGAAAGATCTGTGTAAGAGCATAAACCCGGATGAAGCTGTTGCTTATGGAGCTGCTGTTCAGGCAGCTATATTGAGTGGTGAAGGCAATGAGAAGGTTCAAGATTTGTTGCTTTTGGATGTCACTCCATTGTCTCTTGGTTTGGAAACTGCTGGAGGTGTCATGACTGTATTGATTCCAAGGAATACTACCATTCCTACAAAGAAGGAACAAGTATTCTCTACATATTCAGATAACCAACCTGGTGTCTTGATTCAAGTTTATGAGGGTGAGAGAACAAGAACCAGGGATAACAACTTGCTGGGTAAGTTTGAGCTGTCAGGCATTCCTCCAGCTCCCCGCGGTGTACCTCAGATCACTGTTTGCTTTGATATTGATGCTAATGGTATCTTGAATGTCTCTGCTGAGGATAAAACAACTGGGCAGAAGAACAAGATTACCATTACCAATGACAAAGGAAGATTGTCAAAGGAAGAAATTGAGAAGATGGTTCAAGAAGCTGAAAAATACAAGTCTGAAGATGAGGAGCACAAGAAGAAGGTTGAGGCAAAGAATGCCTTGGAGAACTATGCCTACAACATGAGAAACACCATAAAGGATGAGAAGATCAGTTCAAAGCTTTCCTCTGAAGACAAGACAAAGATCGATAATGCAATTGAGCAGGCCATTCAGTGGCTTGATACCAATCAGCTTGCAGAAGCTGATGAATTTGAAGACAAGATGAAGGAGCTTGAGAGCATATGTAATCCCATTATAGCCAAGATGTACCAAGGCGGGGCTGGTGCAGGCGGTGATGTGGATGATGATGCTCCACCTGCTAGTGGTAGTGGTGCTGGCCCCAAGATTGAGGAGGTTGATTAA 1182 0.4442 MVHKNGLAEGEDPTLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKDLCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKISSKLSSEDKTKIDNAIEQAIQWLDTNQLAEADEFEDKMKELESICNPIIAKMYQGGAGAGGDVDDDAPPASGSGAGPKIEEVD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0154 393 Gene3D - 65 112 - -
Ssu3g0154 393 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 289 370 IPR029048 -
Ssu3g0154 393 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 137 290 IPR029047 -
Ssu3g0154 393 Coils Coil 267 287 - -
Ssu3g0154 393 Pfam Hsp70 protein 15 364 IPR013126 GO:0005524|GO:0140662
Ssu3g0154 393 ProSitePatterns Heat shock hsp70 proteins family signature 3. 86 100 IPR018181 -
Ssu3g0154 393 MobiDBLite consensus disorder prediction 365 393 - -
Ssu3g0154 393 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 138 295 IPR029047 -
Ssu3g0154 393 Gene3D - 291 365 IPR029048 -
Ssu3g0154 393 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 15 375 - -
Ssu3g0154 393 PANTHER HEAT SHOCK PROTEIN 70KDA 15 375 IPR013126 GO:0005524|GO:0140662
Ssu3g0154 393 PRINTS 70kDa heat shock protein signature 83 99 - -
Ssu3g0154 393 PRINTS 70kDa heat shock protein signature 142 161 - -
Ssu3g0154 393 PRINTS 70kDa heat shock protein signature 115 135 - -
Ssu3g0154 393 PRINTS 70kDa heat shock protein signature 223 239 - -
Ssu3g0154 393 SUPERFAMILY Actin-like ATPase domain 14 134 IPR043129 -
Ssu3g0154 393 Gene3D - 113 130 - -
Ssu3g0154 393 Gene3D Actin; Chain A, domain 4 14 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0154 Ssu-Chr3 2838140 2840955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0154 15 393 Calmodulin-binding Proteins AT3G12580 90.838 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0154 K03283 - gmx:100789485 712.605