Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0142 ATGGTAGATGCTTTATTTCAGGGCATTGATTTCCAGTCTTCAATCACTCGtgcaaaatttgaagaaatcAATATCGAGCTCTTTCAAGAGTGTATGGAGACAGTAGATAGGTGTCTTGCTGATGCTAAGATGGACAAGGGCAGTGTTCATGATGTTGTCCTCGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGAACCTATTGCAGGACTTCTTCAAGGGGAAGGATCTGTGCAAGAGTATCAATCCTGACGAAGCTGTTGCATATGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTAGTGCTGTTGGATGTTACACCACTGTCTCTTGGTGTATCGGTAAAAGGAGATCTCATGAGTGTGGTGATTCCTAGAAATACTCCCATTCCTGCAAAGAGGACCAAAGAATTCTTTACAACTGAAGATAACCAATCCTCTGCCTTGATTGAGGTTTATGAAGGTGAGAGAACAAGAGCCAGTGATAATAATTTGCTGGGATCTTACACACTTTCTGGCCTTCCTCCTGCTCCTCGTGGCCATCCTATGTATGATTGCTTTGCCATAGATGAAAATGGTATCCTAACTGTTTCTACTGAGGAAAAAACAACTGGCAATAAGAACAAGATTACCATAACTAATGACAAAGAAAGACTGCCAGCAAAAGAAATTAGAAGAATGATTCAAGAAGCAGAGAAATACCAAGCTGAAGATAAGAAATTCCTTAGGAAGGCCAAAGCAAGGAATGCTTTCGATGATTACGTTTACAAGATGAGGAATGCATTAAAGAACAAGTATATCAGCTCAAAAGAAAGGAAAACGATCAGTTCTGCAATTACTAAGGCTACAAATTTGCTTGATGGTGATGACCAGCAGGATGAAATAGAGGTGTTTGAGGATTATCTAAAGGAGCTTGTGAACCTCTTTGATCACATCATTGGCAAGAGTTGTTAG 975 0.4021 MVDALFQGIDFQSSITRAKFEEINIELFQECMETVDRCLADAKMDKGSVHDVVLVGGSSRIPKVQNLLQDFFKGKDLCKSINPDEAVAYGAAVQAALLSEGIKNVPNLVLLDVTPLSLGVSVKGDLMSVVIPRNTPIPAKRTKEFFTTEDNQSSALIEVYEGERTRASDNNLLGSYTLSGLPPAPRGHPMYDCFAIDENGILTVSTEEKTTGNKNKITITNDKERLPAKEIRRMIQEAEKYQAEDKKFLRKAKARNAFDDYVYKMRNALKNKYISSKERKTISSAITKATNLLDGDDQQDEIEVFEDYLKELVNLFDHIIGKSC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0142 324 Gene3D - 255 324 IPR029048 -
Ssu3g0142 324 PANTHER HEAT SHOCK 70 KDA PROTEIN 2 322 - -
Ssu3g0142 324 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 103 254 IPR029047 -
Ssu3g0142 324 PRINTS 70kDa heat shock protein signature 49 65 - -
Ssu3g0142 324 PRINTS 70kDa heat shock protein signature 107 126 - -
Ssu3g0142 324 PRINTS 70kDa heat shock protein signature 187 203 - -
Ssu3g0142 324 PRINTS 70kDa heat shock protein signature 81 101 - -
Ssu3g0142 324 Gene3D - 31 78 - -
Ssu3g0142 324 Gene3D Actin; Chain A, domain 4 2 30 - -
Ssu3g0142 324 Gene3D - 79 96 - -
Ssu3g0142 324 PANTHER HEAT SHOCK PROTEIN 70KDA 2 322 IPR013126 GO:0005524|GO:0140662
Ssu3g0142 324 Pfam Hsp70 protein 5 317 IPR013126 GO:0005524|GO:0140662
Ssu3g0142 324 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 254 322 IPR029048 -
Ssu3g0142 324 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 104 259 IPR029047 -
Ssu3g0142 324 SUPERFAMILY Actin-like ATPase domain 3 99 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0142 Ssu-Chr3 2710583 2711557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0142 2 322 Calmodulin-binding Proteins AT3G12580 61.774 1.55e-137 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0142 K03283 - gmx:102667578 473.396