LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0140	ATGGTGAACTATTTTGTAGAAGAGTTCAAGAGGAAGAACAAAGTGGACATTAGTGGGAACCCAAGAGCCCTGAGGAGGTTGAGAACTGCGTGTGAGAGAGCAAAACGGACACTCTCATACGCTGTTGATACCACGATTGAGGTAGATGCTTTATCCGGGGGCATCGACTTCTGTTCATCAATCACTCGCGCAAGGTTTGAGGATCTCAACATGGACCTCTTTAGAAAGTGTATGGAGACAGCAGATAGGTGTCTTGTTGATTCTAAGATGGACAAGAGTGATATACATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGCAGGACTTCTTCAAGGGGAAGGATCTATGCATCAGCATCAACCCTGATGAGGCTGTTGCTTATGGAGCAGCAGTCCAGGCTGCTTTGTTGACTAAAGGCAACAAGTATGTTCCCAACTTAGTGCTATTGGATGTTACTCCACTGTCACTGGGTATATCCACAAAAGGAGATCTCATGAGTGTGGTGATTCCTAGGAACACTACCATTCctgtaaagaagaaagaaggattcGAGACAACTGTAGATAACCAAACCTCTGTCCTGATTGAGGTTTATGAGGGAGAGAGAACAAGAGCCAGTGATAACAATTTGCTGggtttttttactctttttggtCTTCCTCTTGCTCCTCGAGGTCATCCCTTTGATGTGTGCTTTACCATAGATGAAAATGGTATCCTATCTGTTTCTGCCGAGGAAAAAACCACTGGATGTAAGAATGAGATTACCATAACCAATGACAAAGGAAGACTATCAACTCAACAAATTATGAGATTGATTCAAGAAGCTGAGAAATACAAGGCTGAAGACCAGAAGTACCAGAAGAAAGTTAATGCAATGAATGCTTTGGATGATTACGTTTACAAGATAAGGAATGCCATAGAGGATGTTTATAACAGTCATAAGCTTCATCCACAAGACAAAATGAAGATCAATTTGGCAATTACAAAGGCCAGAAACTTGCTTGATGCCAGCCAGCAGACAGAAACAGGGGTGTTTGAGGATTATCTGAACGAGGTGAAGAGCCTCATTGAACCCTCTGTGAGGATTGATTAG	1119	0.4129	MVNYFVEEFKRKNKVDISGNPRALRRLRTACERAKRTLSYAVDTTIEVDALSGGIDFCSSITRARFEDLNMDLFRKCMETADRCLVDSKMDKSDIHDVVLVGGSSRIPKVQQLLQDFFKGKDLCISINPDEAVAYGAAVQAALLTKGNKYVPNLVLLDVTPLSLGISTKGDLMSVVIPRNTTIPVKKKEGFETTVDNQTSVLIEVYEGERTRASDNNLLGFFTLFGLPLAPRGHPFDVCFTIDENGILSVSAEEKTTGCKNEITITNDKGRLSTQQIMRLIQEAEKYKAEDQKYQKKVNAMNALDDYVYKIRNAIEDVYNSHKLHPQDKMKINLAITKARNLLDASQQTETGVFEDYLNEVKSLIEPSVRID	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0140	372	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	151	305	IPR029047	-
	Ssu3g0140	372	Gene3D	-	302	370	IPR029048	-
	Ssu3g0140	372	Gene3D	-	125	142	-	-
	Ssu3g0140	372	Gene3D	-	77	124	-	-
	Ssu3g0140	372	Pfam	Hsp70 protein	1	366	IPR013126	GO:0005524\|GO:0140662
	Ssu3g0140	372	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	149	301	IPR029047	-
	Ssu3g0140	372	SUPERFAMILY	Heat shock protein 70kD (HSP70), C-terminal subdomain	300	367	IPR029048	-
	Ssu3g0140	372	ProSitePatterns	Heat shock hsp70 proteins family signature 3.	98	112	IPR018181	-
	Ssu3g0140	372	SUPERFAMILY	Actin-like ATPase domain	1	144	IPR043129	-
	Ssu3g0140	372	Coils	Coil	277	297	-	-
	Ssu3g0140	372	PRINTS	70kDa heat shock protein signature	233	249	-	-
	Ssu3g0140	372	PRINTS	70kDa heat shock protein signature	95	111	-	-
	Ssu3g0140	372	PRINTS	70kDa heat shock protein signature	153	172	-	-
	Ssu3g0140	372	PRINTS	70kDa heat shock protein signature	127	147	-	-
	Ssu3g0140	372	PANTHER	HEAT SHOCK PROTEIN 70KDA	1	368	IPR013126	GO:0005524\|GO:0140662
	Ssu3g0140	372	Gene3D	Actin; Chain A, domain 4	1	76	-	-
	Ssu3g0140	372	PANTHER	HEAT SHOCK 70 KDA PROTEIN	1	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g0140	Ssu-Chr3	2698296	2699414	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g0140	1	369	Calmodulin-binding Proteins	AT3G12580	66.577	3.56e-174	498

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g0140	K03283		-	gmx:102667572	500.745