Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0139 ATGGCCAGAAAATACAAGGGATGTGCAGTGGGAATCGACCTTGGCACAACTTACTCTTGTGTTGCGGTATGGCAGGAGCAGCACTGTCGAGTGGAGATCATCCACAATGACCAAGGCAACAACACCACTCCTTCTTGTGTTGCTTTCACGGACCATGAAAGGTTGATTGGTGATGCTGCTAAAAATCAGGCTGCCACTAACCCAGAGAACACTGTGtttgATGCTAAGAGGTTGATTGGTAGGAAATTTAGTGATCCCATtattcaaaaagataaaaagttgtGGCCATTCAAGGTTGTTGCCGGTACTAATGATAAACCCACGATCGTTGTTAAGTACAAGGGTCAGGAAAAGCACCTTTGTGCTGAGGAAGTATCATCCATGGTCCTCATGAAGATGCGTGAGATTGCAGAGGCATATTTGGAAAAACCGGTAAAGAATGCAGTGGTTACTGTGCCTGCTTATTTTAATGACTCTCAGCGTAAAACCACCATGGATGCTGGTGCCATTGCTGGCCTCAATGTTATGCGGATAATCAACGAACCCACTGCTGCAGCTATTGCGTATGGCCTTGACAAGAGATCTAATTATGTTGGAGAGCGAAACATTTTCATCTTTGACCTTGGTGGTGGTACTTTTGACGTGTCTCTACTCACAATTAAGGATAAGGTCTTCCAAGTTAAGGCTACTGCAGGAAACACTCACCTCGGGGGGGAGGACTTTGACAACAGAGTGGTGAACTACTTTGTACAGGAGTTCAAGAGGAAGAACAAAGTGAACATTAGTGGAAACCCAAGAGCCCTGAGGAGGTTGAGAAATGCATGTGAGAGGGCAAAAAGGACACTCTCATACGCTGTTTCTACCATCATTGAGGTAGATGCTTTGTTTCAGGGCATTGACTTTTGCTCTCCAATCACTCGTGCAAAATTCGAGGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACAGTAGATAGGTGTCTTACTGATGCTAAGATGGACAAGGGCAGTGTGCATGATGTTGTCCTCGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGCAGGACTTCTTTGAGGGAAAGGATCTGTGCAAGAGCATCAACCCCGACGAGGCTGTTGCTTATGGTGCGGCTATTCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTAGTGCTGTTGGATGTTACACCACTGTCTGTTGGTGTATCACTACGGGAAGATGTCATGTGTGTGGTGATTCCTAGAAATACTCCCATTCCTGTAAAGGGGACCAAAGAATTGGTTACATTTAAAGATAATCAATCCTCTGCCTTGATTGAAGTTTATGAGGGTGAGAGAACAAGGGCCAGTGATAACAATTTACTGGGTTTTTACTCACTTTATGGCCTTCCCCCTGCTCCTCGTGGCCATCTTATCTATAATTGCTTTGCCATAGATGCAAATGGTATCCTAACTGTTTCTACTGAGGAAAAAACCACAGGCAATAAGAACAAGATTACCATAACTAATGACAAAGAAAGACTGTCAGCAGAACAAATTAGAAGAATGATTCAAGAAGCAGAGAAATACCAAGCTGAAGATAAGAAATTCCTTAGGAAGGCCAAAGCAAGGAATGCTTTGGATGATTACGTTTACAAGATGAGGAATGCTTTGAAGAACAAGAATATCAGTTCACAAGAAAGTAAGAAGGTCAGTTCTGCAATTACTAAGGCTACAGATTTGCTTGATGGTGATAACCAGAAGGATGAAATAGAGGTGTTTGAGGATTATCTACAGGAGCTTGTGAGCCTCTTTGATCACATCATGGGCAAGAGTCGTTAG 1845 0.4304 MARKYKGCAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNNTTPSCVAFTDHERLIGDAAKNQAATNPENTVFDAKRLIGRKFSDPIIQKDKKLWPFKVVAGTNDKPTIVVKYKGQEKHLCAEEVSSMVLMKMREIAEAYLEKPVKNAVVTVPAYFNDSQRKTTMDAGAIAGLNVMRIINEPTAAAIAYGLDKRSNYVGERNIFIFDLGGGTFDVSLLTIKDKVFQVKATAGNTHLGGEDFDNRVVNYFVQEFKRKNKVNISGNPRALRRLRNACERAKRTLSYAVSTIIEVDALFQGIDFCSPITRAKFEEINMELFEECMETVDRCLTDAKMDKGSVHDVVLVGGSSRIPKVQQLLQDFFEGKDLCKSINPDEAVAYGAAIQAALLSEGIKNVPNLVLLDVTPLSVGVSLREDVMCVVIPRNTPIPVKGTKELVTFKDNQSSALIEVYEGERTRASDNNLLGFYSLYGLPPAPRGHLIYNCFAIDANGILTVSTEEKTTGNKNKITITNDKERLSAEQIRRMIQEAEKYQAEDKKFLRKAKARNALDDYVYKMRNALKNKNISSQESKKVSSAITKATDLLDGDNQKDEIEVFEDYLQELVSLFDHIMGKSR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0139 614 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Ssu3g0139 614 Gene3D - 194 368 - -
Ssu3g0139 614 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Ssu3g0139 614 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Ssu3g0139 614 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 612 IPR029048 -
Ssu3g0139 614 Pfam Hsp70 protein 9 610 IPR013126 GO:0005524|GO:0140662
Ssu3g0139 614 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Ssu3g0139 614 Gene3D - 10 386 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 339 355 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 8 21 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 38 50 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 148 168 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 397 416 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 211 221 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 371 391 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 60 68 - -
Ssu3g0139 614 PRINTS 70kDa heat shock protein signature 477 493 - -
Ssu3g0139 614 Gene3D - 546 613 IPR029048 -
Ssu3g0139 614 PANTHER HEAT SHOCK PROTEIN 70KDA 4 613 IPR013126 GO:0005524|GO:0140662
Ssu3g0139 614 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 613 - -
Ssu3g0139 614 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
Ssu3g0139 614 Gene3D Actin; Chain A, domain 4 237 320 - -
Ssu3g0139 614 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Ssu3g0139 614 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Ssu3g0139 614 Gene3D - 73 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0139 Ssu-Chr3 2687764 2689705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0139 1 612 Calmodulin-binding Proteins AT3G12580 68.770 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0139 K03283 - gmx:102667572 999.193